VSB776
Library VS
(Link to library)
Clone ID VSB776
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16027-1
Original site URL
Representative seq. ID VSB776E
(Link to Original site)
Representative DNA sequence
>VSB776 (VSB776Q) /CSM/VS/VSB7-D/VSB776Q.Seq.d/
AGTTAAATTTTAAGAAAATGCCTCACTCATTCGGTCTCCGTGCTCGTACCAGATACTTGT
TCTCTCGTGGTTTCAGAAACCATGGTCTCTTACAAACCACCACCTTCTTAAGAACTTTCC
GTTTAGGTGATTACGTTGATATCAAAGCCACCGGTAATGTACACAAAGGTATGCCACACA
AATTNTACCACGGTCGTACCGGTCGTGTTTGGAATGTTACTCCACGTGCTGTTGGTGTCA
TCATCAACAAACGTGTTGGTCCAAGAATCATTGCCAAGAAAATCCACGTCAGAACTGAAC
ACGTCAAACCATCAAACTCCATGGCTGCTCACTTAAAACGTATCCAAGAAAACAAAAAAG
CTGTCGTTGAAGCCAAGAAAGCCGGTAAATGGGTCGATGTTAGACGTAACCCAGCTGCAC
CAAAGGACGGTTTCTTTGTCAACCCAAGAAACACTGAATTCGTTGAAGTCAAACCAGTCA
AATACGAACTTTTATTATAAATTAATTTAAAAGAGTGGTGGCTAATATGGTTCAATCGCA
ATCCTTTGATTATCCAAATTTGTNTTATTTAAAAAAGAAAAATAAAAAAAAATATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 2000. 4.18
Translated Amino Acid sequence
LNFKKMPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHK
XYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKA
VVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELLL*inlkewwliwfnrn
pliiqicxi*krkikknikkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
s*ilrkclthsvsvlvpdtcslvvsetmvsykppps*elsv*vitliskppvmytkvcht
nxttvvpvvfgmllhvllvssstnvlvqeslprkstselntsnhqtpwllt*nvskktkk
lslkprkpvngsmldvtqlhqrtvslstqetlnslksnqsntnfyykli*ksgg*ygsia
il*lskfvlfkkek*kki*kkkkkkkkkkkkkkk


Frame B:
vkf*enaslirspcsyqilvlswfqkpwsltnhhllknfpfr*lr*yqshr*ctqryatq
ixprsyrsclecystccwchhqqtcwsknhcqenprqn*trqtiklhgcslktyprkqks
cr*sqesr*mgrc*t*psctkgrflcqpkkh*ir*sqtsqirtfiin*fkrvvanmvqsq
sfdypnlxylkkknkkkykkkkkkkkkkkkkkkk


Frame C:
LNFKKMPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHK
XYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKA
VVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELLL*inlkewwliwfnrn
pliiqicxi*krkikknikkkkkkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSB776 (VSB776Q) /CSM/VS/VSB7-D/VSB776Q.Seq.d/ 1118 0.0
VHK774 (VHK774Q) /CSM/VH/VHK7-D/VHK774Q.Seq.d/ 1118 0.0
VFL168 (VFL168Q) /CSM/VF/VFL1-C/VFL168Q.Seq.d/ 1118 0.0
VFJ214 (VFJ214Q) /CSM/VF/VFJ2-A/VFJ214Q.Seq.d/ 1118 0.0
VHH523 (VHH523Q) /CSM/VH/VHH5-A/VHH523Q.Seq.d/ 1110 0.0
FC-193 (FC-193Q) /CSM/CG/CG-FC/FC-193Q.Seq.d/ 1106 0.0
VSI403 (VSI403Q) /CSM/VS/VSI4-A/VSI403Q.Seq.d/ 1094 0.0
VSF754 (VSF754Q) /CSM/VS/VSF7-C/VSF754Q.Seq.d/ 1094 0.0
VSB311 (VSB311Q) /CSM/VS/VSB3-A/VSB311Q.Seq.d/ 1090 0.0
FC-BQ22 (FC-BQ22Q) /CSM/FC/FC-BQ/FC-BQ22Q.Seq.d/ 1090 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL370150|AL370150.1 Medicago truncatula EST MtBA36A09F1 : T3 end of clone MtBA36A09 of truncatula (barrel medic). 90 5e-14 1
BE124671|BE124671.1 EST393706 GVN Medicago truncatula cDNA clone pGVN-67A24, mRNA sequence. 90 5e-14 1
AJ502255|AJ502255.1 Medicago truncatula EST, clone mtgmadc120018e06. 90 5e-14 1
AW573675|AW573675.1 EST316266 GVN Medicago truncatula cDNA clone pGVN-47J24, mRNA sequence. 90 5e-14 1
BQ154523|BQ154523.1 NF073C12IR1F1098 Irradiated Medicago truncatula cDNA clone NF073C12IR 5', mRNA sequence. 90 5e-14 1
BF634630|BF634630.1 NF064C11DT1F1085 Drought Medicago truncatula cDNA clone NF064C11DT 5', mRNA sequence. 90 5e-14 1
AW682908|AW682908.2 NF001G03LF1F1023 Developing leaf Medicago truncatula cDNA clone NF001G03LF 5', mRNA sequence. 90 5e-14 1
AJ502274|AJ502274.1 Medicago truncatula EST, clone mtgmadc120018g08. 90 5e-14 1
AW683430|AW683430.2 NF011H04LF1F1043 Developing leaf Medicago truncatula cDNA clone NF011H04LF 5', mRNA sequence. 90 5e-14 1
AJ503169|AJ503169.1 Medicago truncatula EST, clone mtgmadc120030e08. 90 5e-14 1
dna update 2004. 2.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54X53) RecName: Full=60S ribosomal protein L21; 266 5e-70
FN357335_1(FN357335|pid:none) Schistosoma mansoni genome sequenc... 154 2e-36
AY813279_1(AY813279|pid:none) Schistosoma japonicum SJCHGC00639 ... 150 2e-35
GN110337_1(GN110337|pid:none) Sequence 15118 from Patent WO20090... 147 3e-34
GN110445_1(GN110445|pid:none) Sequence 15226 from Patent WO20090... 146 4e-34
AF475114_1(AF475114|pid:none) Triticum aestivum 60s ribosomal pr... 146 6e-34
GN110339_1(GN110339|pid:none) Sequence 15120 from Patent WO20090... 146 6e-34
GN110301_1(GN110301|pid:none) Sequence 15082 from Patent WO20090... 145 1e-33
GN110441_1(GN110441|pid:none) Sequence 15222 from Patent WO20090... 145 1e-33
CS559802_1(CS559802|pid:none) Sequence 389 from Patent WO2006032... 145 1e-33
protein update 2009. 7.28
PSORT

psg: 0.71 gvh: 0.40 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.57 mip: 0.08
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: mitochondrial
16.0 %: cytoplasmic
4.0 %: nuclear

>> prediction for VSB776 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSB776E
Full length Seq.
>VSB776E.Seq
AGTTAAATTTTAAGAAAATGCCTCACTCATTCGGTCTCCGTGCTCGTACCAGATACTTGT
TCTCTCGTGGTTTCAGAAACCATGGTCTCTTACAAACCACCACCTTCTTAAGAACTTTCC
GTTTAGGTGATTACGTTGATATCAAAGCCACCGGTAATGTACACAAAGGTATGCCACACA
AATTNTACCACGGTCGTACCGGTCGTGTTTGGAATGTTACTCCACGTGCTGTTGGTGTCA
TCATCAACAAACGTGTTGGTCCAAGAATCATTGCCAAGAAAATCCACGTCAGAACTGAAC
ACGTCAAACCATCAAACTCCATGGCTGCTCACTTAAAACGTATCCAAGAAAACAAAAAAG
CTGTCGTTGAAGCCAAGAAAGCCGGTAAATGGGTCGATGTTAGACGTAACCCAGCTGCAC
CAAAGGACGGTTTCTTTGTCAACCCAAGAAACACTGAATTCGTTGAAGTCAAACCAGTCA
AATACGAACTTTTATTATAAATTAATTTAAAAGAGTGGTGGCTAATATGGTTCAATCGCA
ATCCTTTGATTATCCAAATTTGTNTTATTTAAAAAAGAAAAATAAAAAAAAATATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 643