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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB739
Library VS
(Link to library)
Clone ID VSB739
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15118-1
Original site URL
Representative seq. ID VSB739Z
(Link to Original site)
Representative DNA sequence 
>VSB739 (VSB739Q) /CSM/VS/VSB7-B/VSB739Q.Seq.d/
XXXXXXXXXXTTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTACTGGTTCAGCTCGTC
AATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGACGGTTTAATCGGTT
TATACCGTGGTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACAGAGCTGCTTTCTTTG
GTGGTTACGATACTGCTAAAGGAATTTTATTAGGTGAAAACAACAAGAAAGCTTCATTCT
GGGCTTCATGGGGTATCGCACAAGTTGTCACTACCATCGCTGGTGTAGTCAGCTACCCAT
TCGATACTGTTCGTAGAAGAATGATGATGCAAGCCGGTCGTGCTGATATTCTTTATTCAA
GCACTTGGGATTGTTGGGTAAAGATTGCCACCCGTGAAGGTCCAACTGCCTTCTTCAAAG
GTGCTTTATCAAATGCCATCAGAGGTTCAGGTGGTGCTTTAGTTTTAGTTATTTATGATG
AAATCCAAAAACTTATGGGTTTTGAAGGTGGTGTTGGTTCTGAATAAGAAAATCCGCAAG
AAAAAAAACAGGATTTTAACTAAAAAAAAAAAACATACATGAAATATAAAATAAAACTTT
TTAAAAAAAAAATACTATAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 2000. 4. 6
Translated Amino Acid sequence 
---FARTRLAADVGTGSARQFTGLGNCISSIYKRDGLIGLYRGFGVSVGGIFVYRAAFFG
GYDTAKGILLGENNKKASFWASWGIAQVVTTIAGVVSYPFDTVRRRMMMQAGRADILYSS
TWDCWVKIATREGPTAFFKGALSNAIRGSGGALVLVIYDEIQKLMGFEGGVGSE*enpqe
kkqdfn*kkktymkykiklfkkkil*kkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---FARTRLAADVGTGSARQFTGLGNCISSIYKRDGLIGLYRGFGVSVGGIFVYRAAFFG
GYDTAKGILLGENNKKASFWASWGIAQVVTTIAGVVSYPFDTVRRRMMMQAGRADILYSS
TWDCWVKIATREGPTAFFKGALSNAIRGSGGALVLVIYDEIQKLMGFEGGVGSE*enpqe
kkqdfn*kkktymkykiklfkkkil*kkkkkkkk


Frame B:
---lpvlv*llmlvlvqlvnslv*vtvslqstretv*svytvvlvylsevslstellslv
vtillkefy*vkttrklhsglhgvshklslpslv*sathsilfvee**ckpvvliffiqa
lgivg*rlppvkvqlpsskvlyqmpsevqvvl*f*lfmmksknlwvlkvvlvlnkkirkk
knriltkkkkht*nik*nflkkkyykkkkkkkk


Frame C:
---cpysfsc*cwywfsssihwfr*lylfnlqerrfnrfipwfwcicrrylclqscflww
lryc*rnfir*kqqesfilgfmgyrtschyhrwcsqlpirycs*knddasrsc*yslfkh
lgllgkdchp*rsncllqrcfikchqrfrwcfsfsyl**npktygf*rwcwf*irksark
ktgf*lkkknihei*nktf*kkntikkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB739 (VSB739Q) /CSM/VS/VSB7-B/VSB739Q.Seq.d/                       1102   0.0
SSF682 (SSF682Q) /CSM/SS/SSF6-D/SSF682Q.Seq.d/                       1102   0.0
SSJ856 (SSJ856Q) /CSM/SS/SSJ8-C/SSJ856Q.Seq.d/                       1096   0.0
VSC267 (VSC267Q) /CSM/VS/VSC2-C/VSC267Q.Seq.d/                       1092   0.0
VSA667 (VSA667Q) /CSM/VS/VSA6-C/VSA667Q.Seq.d/                       1092   0.0
VSA479 (VSA479Q) /CSM/VS/VSA4-D/VSA479Q.Seq.d/                       1092   0.0
SSM245 (SSM245Q) /CSM/SS/SSM2-B/SSM245Q.Seq.d/                       1092   0.0
SSL639 (SSL639Q) /CSM/SS/SSL6-B/SSL639Q.Seq.d/                       1092   0.0
SSJ579 (SSJ579Q) /CSM/SS/SSJ5-D/SSJ579Q.Seq.d/                       1092   0.0
SSG306 (SSG306Q) /CSM/SS/SSG3-A/SSG306Q.Seq.d/                       1092   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF039211|AF039211.1 Dictyostelium discoideum ADP/ATP translocase mRNA, complete cds.  1090  0.0  1
AF100676|AF100676.1 Dictyostelium discoideum ADP/ATP translocase gene, complete cds.   696  0.0  2
BI320483|BI320483.1 sah56b01.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-2353 5' similar to TR:O49447 O49447 ADP, ATP CARRIER-LIKE PROTEIN. ;, mRNA sequence.    40  1e-05  3
AW509174|AW509174.1 sh92b04.y1 Gm-c1016 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1016-7592 5' similar to TR:O49447 O49447 ADP, ATP CARRIER-LIKE PROTEIN. ;, mRNA sequence.    40  1e-05  3
AW395111|AW395111.1 sh40a06.y1 Gm-c1017 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1017-4139 5' similar to TR:O49447 O49447 ADP, ATP CARRIER-LIKE PROTEIN. ;, mRNA sequence.    40  1e-05  3
BU082881|BU082881.1 saq39h06.y1 Gm-c1045 Glycine max cDNA clone SOYBEAN CLONE ID: 5' similar to TR:O49447 O49447 ADP, ATP CARRIER-LIKE PROTEIN. ;, mRNA sequence.    40  1e-05  3
AV948299|AV948299.1 Ciona intestinalis cDNA, clone:cicl01n06, 5' end, single read.    36  5e-05  4
AV955771|AV955771.1 Ciona intestinalis cDNA, clone:cilv10g07, 5' end, single read.    36  5e-05  4
AV992813|AV992813.1 Ciona intestinalis cDNA, clone:cicl60e14, 5' end, single read.    36  6e-05  4
AV991462|AV991462.1 Ciona intestinalis cDNA, clone:cilv27n06, 5' end, single read.    36  6e-05  4
dna update 2003. 8.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O97470) RecName: Full=Mitochondrial substrate carrier family pr...   346   4e-94
AF424642_1(AF424642|pid:none) Phytophthora infestans clone MY-03...   225   1e-57
AY725780_1(AY725780|pid:none) Oncometopia nigricans putative mit...   222   8e-57
(Q9VZ70) RecName: Full=ADP,ATP carrier protein; AltName: Full=AD...   219   4e-56
DQ874397_1(DQ874397|pid:none) Pacifastacus leniusculus ATP/ADP t...   218   9e-56
AY227000_1(AY227000|pid:none) Bombyx mori ADP/ATP translocase (A...   218   1e-55
EU093076_1(EU093076|pid:none) Monochamus alternatus adenine nucl...   217   3e-55
AF401758_1(AF401758|pid:none) Ethmostigmus rubripes ADP-ATP tran...   216   6e-55
(P02722) RecName: Full=ADP/ATP translocase 1; AltName: Full=Aden...   216   6e-55
BC102994_1(BC102994|pid:none) Bos taurus solute carrier family 2...   216   6e-55
protein update 2009. 7.28
PSORT 

 psg: 0.67  gvh: 0.44  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VSB739 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSB739Z
3' end seq. 
>VSB739Z.Seq
----------TTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTACTGGTTCAGCTCGTC
AATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGACGGTTTAATCGGTT
TATACCGTGGTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACAGAGCTGCTTTCTTTG
GTGGTTACGATACTGCTAAAGGAATTTTATTAGGTGAAAACAACAAGAAAGCTTCATTCT
GGGCTTCATGGGGTATCGCACAAGTTGTCACTACCATCGCTGGTGTAGTCAGCTACCCAT
TCGATACTGTTCGTAGAAGAATGATGATGCAAGCCGGTCGTGCTGATATTCTTTATTCAA
GCACTTGGGATTGTTGGGTAAAGATTGCCACCCGTGAAGGTCCAACTGCCTTCTTCAAAG
GTGCTTTATCAAATGCCATCAGAGGTTCAGGTGGTGCTTTAGTTTTAGTTATTTATGATG
AAATCCAAAAACTTATGGGTTTTGAAGGTGGTGTTGGTTCTGAATAAGAAAATCCGCAAG
AAAAAAAACAGGATTTTAACTAAAAAAAAAAAACATACATGAAATATAAAATAAAACTTT
TTAAAAAAAAAATACTATAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 634
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -