>AHA214 (AHA214Q) /CSM/AH/AHA2-A/AHA214Q.Seq.d/
XXXXXXXXXXAGGTAGTGAGGTCTATAAAAGAGTTCAACCAGTCGATATCTTCCCAGCAT
TGTCATTAGAAGGTGTACCAAATAGAGATTGTCTTCATCTTACCAAGACNTATGGTATTG
AGAGTGTAAATACTCTTTTCCGTGGTACCATCCGTTATAAAGGTTTCTGTCAAGTCATGG
AAGCTGCCGTCGAAATTGGTCTATTGGATACCACTAGCAAATCACATCTCGCCCCATCCG
CCCCACCAATGTCATGGAATCTCGCAATGCGTCATATCTTACCAATTCCTCAAAGTGAAG
GTATTCCAACTCAAGAACTTTTAAGAAGAAAACTTAGAACTAGAAGAGGTTATCCTTCAA
AAGGCTATGACGATGATAAGATTACCTATATCCTTTACGTCTTTGAGTGGTTAGATATCT
TTAGTGAAAAGAATAATGTCGCTCAATGTGGTAACTATTTCGAAGCTTTCACAGAGTTAT
TGAAAACTAAACTCAATCTCTTACCATCAGAAAGAGATTTAATCATTTTACATAATGTCG
TTGGTATCGAATGGGATGGTGGTAAACATGAAACTAAAACTTCAACACTCGTTTACTATG
GTTCAAAAGATCAATCTGCTGTTAGCACTGTAGTTGGTTTACCAGTTGCTATCGCAGCTG
AATTATT

---GSEVYKRVQPVDIFPALSLEGVPNRDCLHLTKTYGIESVNTLFRGTIRYKGFCQVME
AAVEIGLLDTTSKSHLAPSAPPMSWNLAMRHILPIPQSEGIPTQELLRRKLRTRRGYPSK
GYDDDKITYILYVFEWLDIFSEKNNVAQCGNYFEAFTELLKTKLNLLPSERDLIILHNVV
GIEWDGGKHETKTSTLVYYGSKDQSAVSTVVGLPVAIAAEL

Frame A:
---GSEVYKRVQPVDIFPALSLEGVPNRDCLHLTKTYGIESVNTLFRGTIRYKGFCQVME
AAVEIGLLDTTSKSHLAPSAPPMSWNLAMRHILPIPQSEGIPTQELLRRKLRTRRGYPSK
GYDDDKITYILYVFEWLDIFSEKNNVAQCGNYFEAFTELLKTKLNLLPSERDLIILHNVV
GIEWDGGKHETKTSTLVYYGSKDQSAVSTVVGLPVAIAAEL


Frame B:
---vvrsikefnqsissqhch*kvyqieivfilprxmvlrv*ilfsvvpsvikvsvkswk
lpsklvywiplanhisphpphqchgisqcvisyqflkvkvfqlknf*eenleleevilqk
amtmirlpisftslsg*islvkrimslnvvtisklsqsy*klnsisyhqkei*sfyimsl
vsngmvvnmklklqhsftmvqkinlllal*lvyqllsqlny


Frame C:
---**gl*ksstsrylpsivirrctk*rlsssyqdxwy*eckysfpwyhpl*rflsshgs
crrnwsigyh*qitsrpirptnvmesrnasyltnssk*rysnsrtfkkkt*n*krlsfkr
l*r**dylyplrl*vvryl**ke*crsmw*lfrsfhrvien*tqsltirkrfnhft*crw
yrmgww*t*n*nfntrllwfkrsicc*hcswftscyrs*ii

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB321 (VHB321Q) /CSM/VH/VHB3-A/VHB321Q.Seq.d/                       1296   0.0
AHA214 (AHA214Q) /CSM/AH/AHA2-A/AHA214Q.Seq.d/                       1296   0.0
AHL713 (AHL713Q) /CSM/AH/AHL7-A/AHL713Q.Seq.d/                       1213   0.0
VHE481 (VHE481Q) /CSM/VH/VHE4-D/VHE481Q.Seq.d/                       1199   0.0
AHH124 (AHH124Q) /CSM/AH/AHH1-A/AHH124Q.Seq.d/                       1195   0.0
SHK518 (SHK518Q) /CSM/SH/SHK5-A/SHK518Q.Seq.d/                       1183   0.0
SHJ770 (SHJ770Q) /CSM/SH/SHJ7-C/SHJ770Q.Seq.d/                       1179   0.0
AHK812 (AHK812Q) /CSM/AH/AHK8-A/AHK812Q.Seq.d/                       1174   0.0
SHD787 (SHD787Q) /CSM/SH/SHD7-D/SHD787Q.Seq.d/                       1130   0.0
VHI192 (VHI192Q) /CSM/VH/VHI1-D/VHI192Q.Seq.d/                       1128   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC012414|AC012414.12 Homo sapiens chromosome 15, clone RP11-403B2, complete sequence.    36   0.31   8
AC116905|AC116905.7 Homo sapiens chromosome 15 clone CTD-2062A7 map 15, 3 ordered pieces.    36   0.37   7
AC060814|AC060814.11 Homo sapiens chromosome 15, clone RP11-275E15, complete sequence.    36   0.41   8
AL139004|AL139004.11 Human DNA sequence from clone RP11-398O19 on chromosome 13.    40   1.1    2
AW048636|AW048636.1 UI-M-BH1-amd-c-12-0-UI.s1 NIH_BMAP_M_S2 Mus musculus cDNA clone UI-M-BH1-amd-c-12-0-UI 3', mRNA sequence.    44   2.4    1
AZ941527|AZ941527.1 2M0201L13F Mouse 10kb plasmid UUGC2M library Mus musculus genomic clone UUGC2M0201L13 F, DNA sequence.    44   2.4    1
AC002315|AC002315.1 Mouse BAC-146N21 Chromosome X contains iduronate-2-sulfatase gene; complete sequence.    44   2.4    1
BX294168|BX294168.9 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-29M4.    44   2.4    1
AC124131|AC124131.3 Mus musculus clone RP23-203D7, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44   2.4    1
AC136774|AC136774.4 Homo sapiens chromosome 15 clone RP11-354H8 map 15, WORKING DRAFT SEQUENCE, 2 ordered pieces.    36   2.9    7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC073642_1(BC073642|pid:none) Xenopus laevis MGC82978 protein, m...   131   1e-29
(A2VCW9) RecName: Full=Alpha-aminoadipic semialdehyde synthase, ...   123   4e-27
AJ224761_1(AJ224761|pid:none) Mus musculus mRNA encoding lysine-...   123   5e-27
(Q99K67) RecName: Full=Alpha-aminoadipic semialdehyde synthase, ...   122   7e-27
AK136216_1(AK136216|pid:none) Mus musculus in vitro fertilized e...   119   6e-26
(A8E657) RecName: Full=Alpha-aminoadipic semialdehyde synthase, ...   118   1e-25
AK294326_1(AK294326|pid:none) Homo sapiens cDNA FLJ57358 complet...   116   5e-25
AY751465_1(AY751465|pid:none) Oncorhynchus mykiss lysine ketoglu...   109   6e-23
AL513443_24(AL513443|pid:none) Neurospora crassa DNA linkage gro...   108   1e-22
AM920437_580(AM920437|pid:none) Penicillium chrysogenum Wisconsi...   108   2e-22

 psg: 0.74  gvh: 0.36  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for AHA214 is cyt

>AHA214Z.Seq
NNNNNNNNNNAGGTAGTGAGGTCTATAAAAGAGTTCAACCAGTCGATATCTTCCCAGCAT
TGTCATTAGAAGGTGTACCAAATAGAGATTGTCTTCATCTTACCAAGACNTATGGTATTG
AGAGTGTAAATACTCTTTTCCGTGGTACCATCCGTTATAAAGGTTTCTGTCAAGTCATGG
AAGCTGCCGTCGAAATTGGTCTATTGGATACCACTAGCAAATCACATCTCGCCCCATCCG
CCCCACCAATGTCATGGAATCTCGCAATGCGTCATATCTTACCAATTCCTCAAAGTGAAG
GTATTCCAACTCAAGAACTTTTAAGAAGAAAACTTAGAACTAGAAGAGGTTATCCTTCAA
AAGGCTATGACGATGATAAGATTACCTATATCCTTTACGTCTTTGAGTGGTTAGATATCT
TTAGTGAAAAGAATAATGTCGCTCAATGTGGTAACTATTTCGAAGCTTTCACAGAGTTAT
TGAAAACTAAACTCAATCTCTTACCATCAGAAAGAGATTTAATCATTTTACATAATGTCG
TTGGTATCGAATGGGATGGTGGTAAACATGAAACTAAAACTTCAACACTCGTTTACTATG
GTTCAAAAGATCAATCTGCTGTTAGCACTGTAGTTGGTTTACCAGTTGCTATCGCAGCTG
AATTATT