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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA211
Library AH
(Link to library)
Clone ID AHA211
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16427-1
Original site URL
Representative seq. ID AHA211P
(Link to Original site)
Representative DNA sequence 
>AHA211 (AHA211Q) /CSM/AH/AHA2-A/AHA211Q.Seq.d/
GTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAATAA
AATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATTAG
ATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGATCC
AACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTGACAGCTGATTCAGCAAATAA
TGTTCAAGAGAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCACA
AGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAAGA
ATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAAGG
TAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCAAAATTATTAATTGGTATTGA
TAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAATGA
TTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTAGAGAATATTCAAAAGGTAGT
ATTACCAAAATTGAATGCAACTXXXXXXXXXXTTCTCAATCATGGAGAATAAAGAAGTTG
TCGATCAATATTTAGCTCCAAACATCTCTCAATTCCTTTCACTCTTACATGATGGTGATT
TAATTGTTAGACGTAGTGCCCTCCTTTCATTGAATTACATTGCTCACAATAAACCAAATC
TCATTCGTAATGATCTCTCTGTCTATTTACCAATCTTGTACAACAATGCTAAAATCAAAC
CAGAACTCATTCGTGAAGTTGATCTTGGTCCATTCAAACATAAGGTCGATGATGGTATTG
AAATCAGAAAAACAGCTTTCGAATGTATGTACACTCTTTTGGATACCTCTATCGATAAGA
TCGATGTAGCTCCATTCATCGTTTCATTATGTGATGGTCTCAAAGATACCCAATACGATA
TCAAATTGTTATGTCATTTAATGATCATTCGTTTAGCAAACTCAAATGGTGCTGCTCTCC
TCGAAAATATTACTCTCCTCCTTGAACCACTTCGTGTTATTCTCATGACTAAAGTAAATG
AAACCGCTGTTAAACAACAAATCGAACGTAATGAAGAATGTATTCGTTCAGCTTTACGTG
CTGTCGCTTCCATCTCTAGAATTCCAAATAGTGATAGTATCGTTAAATTTGAAGAATTTG
TTAAAAATACAATTCGTACAACTCCATTAGCTGCTCAATTTAATTCAATTTTATC
sequence update 2002.10.25
Translated Amino Acid sequence 
*lccvcilvdthyiyi*YNKMSFFLGQILEKMGSIDKDIRFMATHDLANELEKDTFKMDP
TYENKIVTKLLALTADSANNVQENVVKCLGLLIKRVKDSQATEIIDTLSKNILEESNKEE
LVEISGIGLKTIITNLPSEGSSISTLVIKNLVPKLLIGIDSEKLKDKNEIKMSCLDILND
LLQKYGSFMIGDLENIQKVVLPKLNAT---

---FSIMENKEVVDQYLAPNISQFLSLLHDGDLIVRRSALLSLNYIAHNKPNLIRNDLSV
YLPILYNNAKIKPELIREVDLGPFKHKVDDGIEIRKTAFECMYTLLDTSIDKIDVAPFIV
SLCDGLKDTQYDIKLLCHLMIIRLANSNGAALLENITLLLEPLRVILMTKVNETAVKQQI
ERNEECIRSALRAVASISRIPNSDSIVKFEEFVKNTIRTTPLAAQFNSIL
Translated Amino Acid sequence (All Frames) 
Frame A:
vivlcvyfg*ytlyiyiiq*nviffrtdfrkdgfhr*ry*ihgns*sck*irkryf*ngs
nl*k*ncykiisids*fsk*csrecc*mfrfin*ks*rftsnrny*yiikkyfrrik*rr
is*nfrywfknnhykftk*r*fnfnfsn*kfstkiinwy***kikr*k*n*nvmfryfk*
fitkvwiiydwrfreyskgsitkiecn---

---FSIMENKEVVDQYLAPNISQFLSLLHDGDLIVRRSALLSLNYIAHNKPNLIRNDLSV
YLPILYNNAKIKPELIREVDLGPFKHKVDDGIEIRKTAFECMYTLLDTSIDKIDVAPFIV
SLCDGLKDTQYDIKLLCHLMIIRLANSNGAALLENITLLLEPLRVILMTKVNETAVKQQI
ERNEECIRSALRAVASISRIPNSDSIVKFEEFVKNTIRTTPLAAQFNSIL

Frame B:
*lccvcilvdthyiyi*YNKMSFFLGQILEKMGSIDKDIRFMATHDLANELEKDTFKMDP
TYENKIVTKLLALTADSANNVQENVVKCLGLLIKRVKDSQATEIIDTLSKNILEESNKEE
LVEISGIGLKTIITNLPSEGSSISTLVIKNLVPKLLIGIDSEKLKDKNEIKMSCLDILND
LLQKYGSFMIGDLENIQKVVLPKLNAT---

---sqswrikklsini*lqtslnsfhsymmvi*lldvvpsfh*itlltinqisfvmisls
iyqscttmlksnqnsfvklilvhsnirsmmvlksekqlsnvctlfwiplsirsm*lhssf
hyvmvskipntisncyvi**sfv*qtqmvllsskillsslnhfvlfs*lk*mkpllnnks
nvmknvfvqlyvlslpslefqivivslnlknllkiqfvqlh*llnliqfy

Frame C:
dcvvcvfwlihiiyiyntikchff*drf*krwvpsikildswqlmilqmn*kkillkwiq
lmkikllqny*h*qliqqimfkrmllnv*vy*lkelkihkqqkllihyqkif*knqikkn
*lkfqvlv*kqslqiyqvkvvqfql**lki*yqny*lvlivkn*kikmklkchv*if*mi
yyksmdhl*lei*rifkr*yyqn*mq---

---lnhge*rscrsifsskhlsipftlt*w*fnc*t*cppfielhcsq*tkshs**slcl
ftnlvqqc*nqtrths*s*swsiqt*gr*wy*nqknsfrmyvhsfgylyr*drcssihrf
im*wsqrypiryqivmsfndhsfsklkwccsprkyyspp*ttscyshd*sk*nrc*ttnr
t**rmysfsftccrfhl*nsk***yr*i*ric*kynsynsiscsi*fnfi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ485 (VHQ485Q) /CSM/VH/VHQ4-D/VHQ485Q.Seq.d/                       1354   0.0
VHB862 (VHB862Q) /CSM/VH/VHB8-C/VHB862Q.Seq.d/                       1354   0.0
SHL726 (SHL726Q) /CSM/SH/SHL7-B/SHL726Q.Seq.d/                       1354   0.0
SHJ830 (SHJ830Q) /CSM/SH/SHJ8-B/SHJ830Q.Seq.d/                       1354   0.0
SHG570 (SHG570Q) /CSM/SH/SHG5-C/SHG570Q.Seq.d/                       1354   0.0
SHC808 (SHC808Q) /CSM/SH/SHC8-A/SHC808Q.Seq.d/                       1354   0.0
SHA612 (SHA612Q) /CSM/SH/SHA6-A/SHA612Q.Seq.d/                       1354   0.0
CHM192 (CHM192Q) /CSM/CH/CHM1-D/CHM192Q.Seq.d/                       1354   0.0
CHG687 (CHG687Q) /CSM/CH/CHG6-D/CHG687Q.Seq.d/                       1354   0.0
CHF870 (CHF870Q) /CSM/CH/CHF8-C/CHF870Q.Seq.d/                       1354   0.0
own update 2004. 4.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.  1354   0.0    17
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    40   3e-08  18
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   1e-05  19
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             36   5e-05  22
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     36   5e-05  22
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    34   6e-05  17
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   7e-05  27
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-04  22
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    36   4e-04  18
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence.    40   5e-04  15
dna update 2004. 2.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86KD1) RecName: Full=Cullin-associated NEDD8-dissociated prote...   415   e-114
BT068509_1(BT068509|pid:none) Zea mays full-length cDNA clone ZM...   193   1e-47
BC004232_1(BC004232|pid:none) Homo sapiens cullin-associated and...   190   8e-47
AK001791_1(AK001791|pid:none) Homo sapiens cDNA FLJ10929 fis, cl...   190   8e-47
AB179357_1(AB179357|pid:none) Macaca fascicularis testis cDNA cl...   190   8e-47
BC026220_1(BC026220|pid:none) Homo sapiens cullin-associated and...   190   8e-47
AB020636_1(AB020636|pid:none) Homo sapiens mRNA for KIAA0829 pro...   190   8e-47
AK292456_1(AK292456|pid:none) Homo sapiens cDNA FLJ77762 complet...   190   8e-47
AL833880_1(AL833880|pid:none) Homo sapiens mRNA; cDNA DKFZp434P1...   190   8e-47
(A7MBJ5) RecName: Full=Cullin-associated NEDD8-dissociated prote...   190   8e-47
protein update 2009. 4.26
PSORT 

 psg: 0.90  gvh: 0.44  alm: 0.36  top: 0.40  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum

>> prediction for AHA211 is cyt
5' end seq. ID AHA211F
5' end seq. 
>AHA211F.Seq
GTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAATAA
AATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATTAG
ATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGATCC
AACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTGACAGCTGATTCAGCAAATAA
TGTTCAAGAGAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCACA
AGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAAGA
ATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAAGG
TAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCAAAATTATTAATTGGTATTGA
TAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAATGA
TTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTAGAGAATATTCAAAAGGTAGT
ATTACCAAAATTGAATGCAACTNNNNNNNNNN
Length of 5' end seq. 632
3' end seq. ID AHA211Z
3' end seq. 
>AHA211Z.Seq
NNNNNNNNNNTTCTCAATCATGGAGAATAAAGAAGTTGTCGATCAATATTTAGCTCCAAA
CATCTCTCAATTCCTTTCACTCTTACATGATGGTGATTTAATTGTTAGACGTAGTGCCCT
CCTTTCATTGAATTACATTGCTCACAATAAACCAAATCTCATTCGTAATGATCTCTCTGT
CTATTTACCAATCTTGTACAACAATGCTAAAATCAAACCAGAACTCATTCGTGAAGTTGA
TCTTGGTCCATTCAAACATAAGGTCGATGATGGTATTGAAATCAGAAAAACAGCTTTCGA
ATGTATGTACACTCTTTTGGATACCTCTATCGATAAGATCGATGTAGCTCCATTCATCGT
TTCATTATGTGATGGTCTCAAAGATACCCAATACGATATCAAATTGTTATGTCATTTAAT
GATCATTCGTTTAGCAAACTCAAATGGTGCTGCTCTCCTCGAAAATATTACTCTCCTCCT
TGAACCACTTCGTGTTATTCTCATGACTAAAGTAAATGAAACCGCTGTTAAACAACAAAT
CGAACGTAATGAAGAATGTATTCGTTCAGCTTTACGTGCTGTCGCTTCCATCTCTAGAAT
TCCAAATAGTGATAGTATCGTTAAATTTGAAGAATTTGTTAAAAATACAATTCGTACAAC
TCCATTAGCTGCTCAATTTAATTCAATTTTATC
Length of 3' end seq. 693
Connected seq. ID AHA211P
Connected seq. 
>AHA211P.Seq
GTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAATAA
AATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATTAG
ATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGATCC
AACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTGACAGCTGATTCAGCAAATAA
TGTTCAAGAGAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCACA
AGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAAGA
ATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAAGG
TAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCAAAATTATTAATTGGTATTGA
TAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAATGA
TTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTAGAGAATATTCAAAAGGTAGT
ATTACCAAAATTGAATGCAACT----------TTCTCAATCATGGAGAATAAAGAAGTTG
TCGATCAATATTTAGCTCCAAACATCTCTCAATTCCTTTCACTCTTACATGATGGTGATT
TAATTGTTAGACGTAGTGCCCTCCTTTCATTGAATTACATTGCTCACAATAAACCAAATC
TCATTCGTAATGATCTCTCTGTCTATTTACCAATCTTGTACAACAATGCTAAAATCAAAC
CAGAACTCATTCGTGAAGTTGATCTTGGTCCATTCAAACATAAGGTCGATGATGGTATTG
AAATCAGAAAAACAGCTTTCGAATGTATGTACACTCTTTTGGATACCTCTATCGATAAGA
TCGATGTAGCTCCATTCATCGTTTCATTATGTGATGGTCTCAAAGATACCCAATACGATA
TCAAATTGTTATGTCATTTAATGATCATTCGTTTAGCAAACTCAAATGGTGCTGCTCTCC
TCGAAAATATTACTCTCCTCCTTGAACCACTTCGTGTTATTCTCATGACTAAAGTAAATG
AAACCGCTGTTAAACAACAAATCGAACGTAATGAAGAATGTATTCGTTCAGCTTTACGTG
CTGTCGCTTCCATCTCTAGAATTCCAAATAGTGATAGTATCGTTAAATTTGAAGAATTTG
TTAAAAATACAATTCGTACAACTCCATTAGCTGCTCAATTTAATTCAATTTTATC
Length of connected seq. 1305
Full length Seq ID -
Full length Seq. -
Length of full length seq. -