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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB590
Library VS
(Link to library)
Clone ID VSB590
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13954-1
Original site URL
Representative seq. ID VSB590Z
(Link to Original site)
Representative DNA sequence 
>VSB590 (VSB590Q) /CSM/VS/VSB5-D/VSB590Q.Seq.d/
XXXXXXXXXXAATGCATCATGTACCACCAATTGTTTAGCTCCATTAGCTAAAATTATCCA
CGAAAACTTTGGTATTGTTGAAGGTTTAATGACCACCGTTCACGCCATCACTGCCACCCA
AAAGACTGTTGATGGTCCATCTGGTAAAGATTGGAGAGCTGGTAGATCTGCCCTTTCAAA
CATTATCCCAGCCTCAACTGGTGCCGCCAAAGCTGTCGGTAAAGTTTTACCAGCACTCAA
TGGTAAATTAACCGGTATGTCATTCCGTGTTCCAAATTGTGATGTTTCAGTCGTCGATTT
AACCGTCCGTCTTGAAAAGAAAGCCACCTATGAAGAAATCAAAAAGGTCATGAAAGCTGC
CTCTGAATCTGACAAATACAAGAGATACATTGGTTACACTGAAGATGAAGTTGTCTCAAC
TGACTTTATTGGTGATACTCACTCTTCAATTTTCGATGCTCATGCTGGTATCGCCTTAAA
TGATAACTTTGTTAAATTAGTCTCATGGTATGATAATGAAATGGGTTATTCAACTCGTGT
TATTGATTTACTTGTTTATATCTCAAAAAAGAATTAAATAAAAAAAATAAATAATAATAA
AAACAAATAAATTTGTTTTTTGTATAAAA
sequence update 2000. 3.23
Translated Amino Acid sequence 
---ASCTTNCLAPLAKIIHENFGIVEGLMTTVHAITATQKTVDGPSGKDWRAGRSALSNI
IPASTGAAKAVGKVLPALNGKLTGMSFRVPNCDVSVVDLTVRLEKKATYEEIKKVMKAAS
ESDKYKRYIGYTEDEVVSTDFIGDTHSSIFDAHAGIALNDNFVKLVSWYDNEMGYSTRVI
DLLVYISKKN*ikkinnnknk*icflyk
Translated Amino Acid sequence (All Frames) 
Frame A:
---mhhvppiv*lh*lklstktlvllkv**ppftpslppkrllmvhlvkigelvdlpfqt
lsqpqlvppklsvkfyqhsmvn*pvchsvfqivmfqssi*psvlkrkppmkkskrs*klp
lnltntrdtlvtlkmklsqltllviltlqfsmlmlvsp*mitlln*shgmimkwviqlvl
liylfisqkrik*kk*iiiktnkfvfcik


Frame B:
---cimyhqlfssis*nyprklwyc*rfndhrsrhhchpkdc*wsiw*rlesw*icpfkh
ypslnwcrqscr*sftstqw*inryvipcskl*cfsrrfnrps*keshl*rnqkghescl
*i*qiqeihwlh*r*scln*lyw*yslfnfrcscwyrlk**lc*islmv***nglfnscy
*ftclylkkelnkknk***kqinlffv*


Frame C:
---ASCTTNCLAPLAKIIHENFGIVEGLMTTVHAITATQKTVDGPSGKDWRAGRSALSNI
IPASTGAAKAVGKVLPALNGKLTGMSFRVPNCDVSVVDLTVRLEKKATYEEIKKVMKAAS
ESDKYKRYIGYTEDEVVSTDFIGDTHSSIFDAHAGIALNDNFVKLVSWYDNEMGYSTRVI
DLLVYISKKN*ikkinnnknk*icflyk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK382 (VSK382Q) /CSM/VS/VSK3-D/VSK382Q.Seq.d/                       1098   0.0
VSB590 (VSB590Q) /CSM/VS/VSB5-D/VSB590Q.Seq.d/                       1098   0.0
VSA603 (VSA603Q) /CSM/VS/VSA6-A/VSA603Q.Seq.d/                       1098   0.0
VFO172 (VFO172Q) /CSM/VF/VFO1-C/VFO172Q.Seq.d/                       1098   0.0
VFC590 (VFC590Q) /CSM/VF/VFC5-D/VFC590Q.Seq.d/                       1098   0.0
SLH736 (SLH736Q) /CSM/SL/SLH7-B/SLH736Q.Seq.d/                       1098   0.0
SLG754 (SLG754Q) /CSM/SL/SLG7-C/SLG754Q.Seq.d/                       1098   0.0
SLE568 (SLE568Q) /CSM/SL/SLE5-C/SLE568Q.Seq.d/                       1098   0.0
SLB229 (SLB229Q) /CSM/SL/SLB2-B/SLB229Q.Seq.d/                       1098   0.0
SFJ752 (SFJ752Q) /CSM/SF/SFJ7-C/SFJ752Q.Seq.d/                       1098   0.0
own update 2001.11.29
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1098  0.0  2
U55243|U55243.1 Dictyostelium discoideum glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, partial cds.   981  0.0  1
BI816321|BI816321.1 PfESToaa39a10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96369 O96369 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE ;, mRNA sequence.    78  8e-43  5
BI815601|BI815601.1 PfESToaa30e06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96369 O96369 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE ;, mRNA sequence.    78  8e-43  5
AF479765|AF479765.1 Plasmodium falciparum HB3 glyceraldehyde-3-phosphate dehydrogenase mRNA, complete cds.    78  8e-42  5
AF348158|AF348158.1 Plasmodium falciparum strain FCC-1/HN glyceraldehyde-3-phosphate dehydrogenase mRNA, complete cds.    78  1e-41  5
AF030440|AF030440.1 Plasmodium falciparum glyceraldehyde-3-phosphate dehydrogenase mRNA, complete cds.    78  2e-41  5
BD218177|BD218177.1 Plasmid for gene expression in pichia ciferri and transformation method using the same.   125  6e-40  4
AF053300|AF053300.1 Pichia ciferrii glyceraldehyde 3-phosphate dehydrogenase (GAPDH) gene, complete cds.   125  6e-40  4
BM276037|BM276037.1 PfESToaa69d08.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to TR:O96369 O96369 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE ;, mRNA sequence.    78  6e-37  4
dna update 2003. 8.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q94469) RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase;...   369   e-101
U55243_1(U55243|pid:none) Dictyostelium discoideum glyceraldehyd...   328   1e-88
BT051304_1(BT051304|pid:none) Medicago truncatula clone MTYF1_F2...   301   8e-81
(P34922) RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase,...   298   7e-80
(Q8NK47) RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase;...   298   7e-80
AJ246023_1(AJ246023|pid:none) Marchantia polymorpha mRNA for gly...   297   2e-79
(P25861) RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase,...   297   2e-79
AY491512_1(AY491512|pid:none) Daucus carota glyceraldehyde 3-pho...   296   4e-79
BT052789_1(BT052789|pid:none) Medicago truncatula clone MTYFH_FI...   296   4e-79
AF339926_1(AF339926|pid:none) Thanatephorus cucumeris glyceralde...   295   6e-79
protein update 2009. 7.28
PSORT 

 psg: 0.83  gvh: 0.54  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VSB590 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSB590Z
3' end seq. 
>VSB590Z.Seq
----------AATGCATCATGTACCACCAATTGTTTAGCTCCATTAGCTAAAATTATCCA
CGAAAACTTTGGTATTGTTGAAGGTTTAATGACCACCGTTCACGCCATCACTGCCACCCA
AAAGACTGTTGATGGTCCATCTGGTAAAGATTGGAGAGCTGGTAGATCTGCCCTTTCAAA
CATTATCCCAGCCTCAACTGGTGCCGCCAAAGCTGTCGGTAAAGTTTTACCAGCACTCAA
TGGTAAATTAACCGGTATGTCATTCCGTGTTCCAAATTGTGATGTTTCAGTCGTCGATTT
AACCGTCCGTCTTGAAAAGAAAGCCACCTATGAAGAAATCAAAAAGGTCATGAAAGCTGC
CTCTGAATCTGACAAATACAAGAGATACATTGGTTACACTGAAGATGAAGTTGTCTCAAC
TGACTTTATTGGTGATACTCACTCTTCAATTTTCGATGCTCATGCTGGTATCGCCTTAAA
TGATAACTTTGTTAAATTAGTCTCATGGTATGATAATGAAATGGGTTATTCAACTCGTGT
TATTGATTTACTTGTTTATATCTCAAAAAAGAATTAAATAAAAAAAATAAATAATAATAA
AAACAAATAAATTTGTTTTTTGTATAAAA
Length of 3' end seq. 619
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -