>VSB580 (VSB580Q) /CSM/VS/VSB5-D/VSB580Q.Seq.d/
XXXXXXXXXXATATAGATAATGTGGATGATGATAATGATGATAATGATAAAGGAAAATAT
AAAGGAAATGAATTTTCAATATTAGAAGAAAGTTTAAATAAATTATTAAATAACGTAGAG
ACTTTTAAAAATTATAATAATCAAATGATTGAATCAAATAATAAGACAGTGGATTTTGTT
CATTCAAGATTCAATAAATAATTTTTTTTTTTTTTTCATTTACTTGATTTTTATTAATTT
TAAGAATATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAGAAATAGAAATAAA
ATTTATTTTTAAAAGTAATAAAAAAGTTTGGTTCAGAAGAGGGGTGTAATAATAAAAAAT
TGAAATTTATAATCAATCAATCGATCAAAACATTTCATTATCAAATAAATAATCAATTTC
ACACCCATACACACACTTACACACACATGAATATAATACAAATTAATAAATGGTTACTTT
AATTAT

---*imwmmimmimikenikemnfqy*kkv*iny*it*rllkiiiik*LNQIIRQWILFI
QDSINNFFFFFIYLIFINFKNIKIKIKIKIKIKIEIEIKFIFKSNKKVWFRRGV***kie
iynqsidqnislsnk*sishpythlhtheyntn**mvtli

Frame A:
---yr*cg********rki*rk*ifnirrkfk*iik*rrdf*kl**snd*ik**dsgfcs
fkiq*iiffffsft*fllilri*k*k*k*k*k*k*k*k*nlflkvikkfgseegcnnkkl
kfiinqsiktfhyqinnqfhththtythmniiqinkwll*l


Frame B:
---idnvdddnddndkgkykgnefsileeslnkllnnvetfknynnqmiesnnktvdfvh
srfnk*fffffhlldfy*f*eyknknknknknknrnrnkiyf*k**kslvqkrgviikn*
nl*sinrskhfiik*iinftpihtltht*i*yklingyfny


Frame C:
---*imwmmimmimikenikemnfqy*kkv*iny*it*rllkiiiik*LNQIIRQWILFI
QDSINNFFFFFIYLIFINFKNIKIKIKIKIKIKIEIEIKFIFKSNKKVWFRRGV***kie
iynqsidqnislsnk*sishpythlhtheyntn**mvtli

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB580 (VSB580Q) /CSM/VS/VSB5-D/VSB580Q.Seq.d/                        276   3e-73
VFO837 (VFO837Q) /CSM/VF/VFO8-B/VFO837Q.Seq.d/                         46   5e-04
VFO520 (VFO520Q) /CSM/VF/VFO5-A/VFO520Q.Seq.d/                         46   5e-04
VFO445 (VFO445Q) /CSM/VF/VFO4-B/VFO445Q.Seq.d/                         46   5e-04
VFN805 (VFN805Q) /CSM/VF/VFN8-A/VFN805Q.Seq.d/                         46   5e-04
VFM695 (VFM695Q) /CSM/VF/VFM6-D/VFM695Q.Seq.d/                         46   5e-04
VFJ255 (VFJ255Q) /CSM/VF/VFJ2-C/VFJ255Q.Seq.d/                         46   5e-04
VFH736 (VFH736Q) /CSM/VF/VFH7-B/VFH736Q.Seq.d/                         46   5e-04
VFH106 (VFH106Q) /CSM/VF/VFH1-A/VFH106Q.Seq.d/                         46   5e-04
VFF193 (VFF193Q) /CSM/VF/VFF1-D/VFF193Q.Seq.d/                         46   5e-04

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34  4e-05  10
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    38  3e-04  11
AF538053|AF538053.1 Monosiga brevicollis mitochondrion, complete genome.    34  7e-04  7
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    34  0.003  11
AX344560|AX344560.1 Sequence 11 from Patent WO0200932.            36  0.004  10
AL929006|AL929006.3 Zebrafish DNA sequence from clone CH211-198G19 in linkage group 18.    38  0.006  6
AC116550|AC116550.2 Dictyostelium discoideum chromosome 2 map 375056-387392 strain AX4, complete sequence.    42  0.007  4
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    34  0.007  11
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36  0.008  10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38  0.011  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ813473_3(DQ813473|pid:none) Uncultured organism clone 4 hypoth...    28   0.57
AK127811_1(AK127811|pid:none) Homo sapiens cDNA FLJ45913 fis, cl...    27   1.3
AE014188_280(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.1
AK085660_1(AK085660|pid:none) Mus musculus 10 days lactation, ad...    27   2.2
CU633895_100(CU633895|pid:none) Podospora anserina genomic DNA c...    26   2.8
BC124116_1(BC124116|pid:none) Danio rerio zgc:152760, mRNA (cDNA...    31   2.8
AK090401_1(AK090401|pid:none) Homo sapiens mRNA for FLJ00278 pro...    26   3.0
AK155501_1(AK155501|pid:none) Mus musculus NOD-derived CD11c +ve...    33   4.5
AK127601_1(AK127601|pid:none) Homo sapiens cDNA FLJ45698 fis, cl...    27   4.6
DQ011582_1(DQ011582|pid:none) Plasmodium cynomolgi Mulligan reti...    33   4.6

 psg: 0.73  gvh: 0.38  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VSB580 is nuc

>VSB580Z.Seq
----------ATATAGATAATGTGGATGATGATAATGATGATAATGATAAAGGAAAATAT
AAAGGAAATGAATTTTCAATATTAGAAGAAAGTTTAAATAAATTATTAAATAACGTAGAG
ACTTTTAAAAATTATAATAATCAAATGATTGAATCAAATAATAAGACAGTGGATTTTGTT
CATTCAAGATTCAATAAATAATTTTTTTTTTTTTTTCATTTACTTGATTTTTATTAATTT
TAAGAATATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAGAAATAGAAATAAA
ATTTATTTTTAAAAGTAATAAAAAAGTTTGGTTCAGAAGAGGGGTGTAATAATAAAAAAT
TGAAATTTATAATCAATCAATCGATCAAAACATTTCATTATCAAATAAATAATCAATTTC
ACACCCATACACACACTTACACACACATGAATATAATACAAATTAATAAATGGTTACTTT
AATTAT