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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA209
Library AH
(Link to library)
Clone ID AHA209
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16515-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AHA209 (AHA209Q) /CSM/AH/AHA2-A/AHA209Q.Seq.d/
ATTGTTTAAATTTATAATGCTACAAGTTTTACAAAAATGAAAGTAATATATATTTATTTG
TTATTATTATTAGTTTGTAAATTTTTATTTGTTAAATCAAGTTGCTCTTTAAAAGTTGGA
AAAATAGAATGTACAAAAGAATTAGAAACGTTTTTATTATATAATGAAACAGTTGTCAAT
GTAAAAATGGATACAAATGGAGTAAAATATTATTTTAATGCACTCGAGTTTCCTTACAAG
AATCTGTTATGCGATTTAAATATTGATATTAAATTCACACCAGAAATCCCATCATTCCCA
AATATACCTACAACAGGTGGAGACTTCGGGTTCACCTTCAACTTTCCTTGCGAGTATACG
GCCATACTAGGTTGGAAACACATCATCCCGTTCGATCTGATAAGTAAATCGACCTCAGGC
CTTCCAAGTACTCTGGTTGGAGACAACAGGGGAACATAGGGTGCTGTATACTCTATAGGC
GAAGAGTCAAACGAATAGAAATAGAAAGAACTATATTATCTCTCAGTTTTGATACAAGCA
AAAATCAGTTCGTTACTTACTTGAATCCAGGGTGTGGTCCTTTCAATATTAGTAGTAGTG
GGATTCAGATTTTGAGTACAACTTATGAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
iv*IYNATSFTKMKVIYIYLLLLLVCKFLFVKSSCSLKVGKIECTKELETFLLYNETVVN
VKMDTNGVKYYFNALEFPYKNLLCDLNIDIKFTPEIPSFPNIPTTGGDFGFTFNFPCEYT
AILGWKHIIPFDLISKSTSGLPSTLVGDNRGT*gavysigeesne*k*kelyylsvliqa
kissllt*iqgvvlsilvvvgfrf*vqlm---
Translated Amino Acid sequence (All Frames) 
Frame A:
iv*IYNATSFTKMKVIYIYLLLLLVCKFLFVKSSCSLKVGKIECTKELETFLLYNETVVN
VKMDTNGVKYYFNALEFPYKNLLCDLNIDIKFTPEIPSFPNIPTTGGDFGFTFNFPCEYT
AILGWKHIIPFDLISKSTSGLPSTLVGDNRGT*gavysigeesne*k*kelyylsvliqa
kissllt*iqgvvlsilvvvgfrf*vqlm---


Frame B:
lfkfimlqvlqk*k*yificyyy*fvnfyllnqval*klek*nvqkn*krfyyimkqlsm
*kwiqme*niilmhssfltricyai*ililnshqkshhsqiylqqvetsgspstflasir
py*vgntssrsi**vnrpqafqvlwlettgehrvlytl*aksqtnrnrknyiisqf*ykq
ksvryllesrvwsfqy***wdsdfeynl*---


Frame C:
clnl*cykfyknesniylfviiisl*ific*ikllfkswknrmykrirnvfii**nscqc
kngykwskilf*ctrvslqesvmrfky*y*ihtrnpiipkytynrwrlrvhlqlslrvyg
htrlethhpvrsdk*idlrpskysgwrqqgnigccilyrrrvkrieiertilslsfdtsk
nqfvtylnpgcgpfnisssgiqilsttye---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA209 (AHA209Q) /CSM/AH/AHA2-A/AHA209Q.Seq.d/                       1063   0.0
AHJ874 (AHJ874Q) /CSM/AH/AHJ8-D/AHJ874Q.Seq.d/                        515   e-145
SHL286 (SHL286Q) /CSM/SH/SHL2-D/SHL286Q.Seq.d/                        515   e-145
SHK623 (SHK623Q) /CSM/SH/SHK6-A/SHK623Q.Seq.d/                        515   e-145
SHK528 (SHK528Q) /CSM/SH/SHK5-B/SHK528Q.Seq.d/                        515   e-145
SHK268 (SHK268Q) /CSM/SH/SHK2-C/SHK268Q.Seq.d/                        515   e-145
SHJ796 (SHJ796Q) /CSM/SH/SHJ7-D/SHJ796Q.Seq.d/                        515   e-145
SHJ471 (SHJ471Q) /CSM/SH/SHJ4-C/SHJ471Q.Seq.d/                        515   e-145
SHJ290 (SHJ290Q) /CSM/SH/SHJ2-D/SHJ290Q.Seq.d/                        515   e-145
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.   515   0.0    3
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.   236   3e-58  1
V00191|V00191.1 5S ribosomal RNA of slime mold (D. discoideum).   236   3e-58  1
M25202|M25202.1 D.discoideum 5S rRNA.                             236   3e-58  1
X67782|X67782.1 D.discoideum 5S ribosomal RNA gene.               236   3e-58  1
AY293825|AY293825.1 Dictyostelium discoideum transposon cluster; tRNA-Leu gene, 5S ribosomal RNA pseudogene, and tRNA-Ser gene, complete sequence.   192   4e-45  1
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    54   2e-07  2
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    38   0.019  9
BX901955|BX901955.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-150I15.    36   0.033  6
CC841928|CC841928.1 NDL.52E15.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NotreDame Liverpool-52E15, genomic survey sequence.    32   0.098  3
dna update 2004. 2.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374900_1(FJ374900|pid:none) Dictyostelium discoideum strain QS...   146   2e-54
FJ374901_1(FJ374901|pid:none) Dictyostelium discoideum strain QS...   145   2e-54
FJ374891_1(FJ374891|pid:none) Dictyostelium discoideum strain QS...   145   2e-54
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   146   2e-54
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   144   9e-54
FJ374912_1(FJ374912|pid:none) Dictyostelium discoideum strain QS...   144   9e-54
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   143   2e-53
FJ374915_1(FJ374915|pid:none) Dictyostelium discoideum strain QS...   143   2e-53
FJ374893_1(FJ374893|pid:none) Dictyostelium discoideum strain QS...   143   2e-53
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   145   2e-53
protein update 2009. 4.26
PSORT 

 psg: 0.95  gvh: 0.68  alm: 0.47  top: 0.60  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: nuclear

>> prediction for AHA209 is exc
5' end seq. ID AHA209F
5' end seq. 
>AHA209F.Seq
ATTGTTTAAATTTATAATGCTACAAGTTTTACAAAAATGAAAGTAATATATATTTATTTG
TTATTATTATTAGTTTGTAAATTTTTATTTGTTAAATCAAGTTGCTCTTTAAAAGTTGGA
AAAATAGAATGTACAAAAGAATTAGAAACGTTTTTATTATATAATGAAACAGTTGTCAAT
GTAAAAATGGATACAAATGGAGTAAAATATTATTTTAATGCACTCGAGTTTCCTTACAAG
AATCTGTTATGCGATTTAAATATTGATATTAAATTCACACCAGAAATCCCATCATTCCCA
AATATACCTACAACAGGTGGAGACTTCGGGTTCACCTTCAACTTTCCTTGCGAGTATACG
GCCATACTAGGTTGGAAACACATCATCCCGTTCGATCTGATAAGTAAATCGACCTCAGGC
CTTCCAAGTACTCTGGTTGGAGACAACAGGGGAACATAGGGTGCTGTATACTCTATAGGC
GAAGAGTCAAACGAATAGAAATAGAAAGAACTATATTATCTCTCAGTTTTGATACAAGCA
AAAATCAGTTCGTTACTTACTTGAATCCAGGGTGTGGTCCTTTCAATATTAGTAGTAGTG
GGATTCAGATTTTGAGTACAACTTATGAAANNNNNNNNNN
Length of 5' end seq. 640
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -