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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA208
Library AH
(Link to library)
Clone ID AHA208
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID AHA208P
(Link to Original site)
Representative DNA sequence 
>AHA208 (AHA208Q) /CSM/AH/AHA2-A/AHA208Q.Seq.d/
AAAAATGGAAAAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTC
AATGAATCCTCCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTT
TAATAGTAATCTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAG
AACTGAAATGGCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTT
ATTCCATTCAGATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGT
TAGAGATAAATCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTA
TCCAAAAGTATACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGT
CATTACTGGCTCATATTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGA
TGTAAATAAACCTTTTGTTGTTAAAGGTAATTTCTCTGATCCATCTTTTGACTGTAATAA
TATTACTGTAACATTTCCACCAGGATCCGGAAAATTTAGGTTGTACTATGATGAAACTGG
GGATAATCCTGTACCATTTTCATACGAAXXXXXXXXXXTTCAAAGTTAATGTAAAATCAA
ATAATAAAAATACCNCAGTATTTGCTCAAGATGAAAAGATATTAATAGTTAGAGATGAAA
GTAGAGAGAGTTCNCTCTTTGTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAA
CATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAA
AAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAA
CAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATG
AAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTT
TATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTA
ACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAA
ACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAG
GTTNTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTTA
AAATACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAAT
TTAAAATCACAAATCACATATGTGTAAAATTAAAACTTAACTAAAAGTAAAATAAATAAA
TAAATAAATAAATGTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
KMEKKIILLILFLFFISGYSMNPPTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPR
TEMAPNYFNCSLVDGERHCLFHSDEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYY
PKVYNLKYSKKPKTSGEDIVITGSYLRLFGGPNFLINSIDVNKPFVVKGNFSDPSFDCNN
ITVTFPPGSGKFRLYYDETGDNPVPFSYE---

---FKVNVKSNNKNTXVFAQDEKILIVRDESRESSLFVTTFIGVRSGPSTTLTYIKPMIS
EIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSETVPLSCNLECSLSPNEILDDSDSSE
TNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSFQYNVTIEEIKLXPSPNVSQXDVETK
SSKPSNGLIIGXTIGSVGGALAIGALAYYFKIPFRVKKFIGKKF*kkkckfkitnhicvk
lkln*k*nk*ink*ml
Translated Amino Acid sequence (All Frames) 
Frame A:
kngkennitdfifvlyirifnessntnrcni***iiyinf***spifypfnfv*krkrtq
n*ngtklfqlfss*wretlfipfr*tilkimg*yrq*gmc*r*ikyc*glyi*cfgfsil
sksiqfei**ktkniw*ryshywlifkiiwws*fpy*fh*ck*tfcc*r*fl*sif*l**
yycnistrirki*vvl**nwg*sctifir---

---FKVNVKSNNKNTXVFAQDEKILIVRDESRESSLFVTTFIGVRSGPSTTLTYIKPMIS
EIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSETVPLSCNLECSLSPNEILDDSDSSE
TNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSFQYNVTIEEIKLXPSPNVSQXDVETK
SSKPSNGLIIGXTIGSVGGALAIGALAYYFKIPFRVKKFIGKKF*kkkckfkitnhicvk
lkln*k*nk*ink*ml

Frame B:
KMEKKIILLILFLFFISGYSMNPPTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPR
TEMAPNYFNCSLVDGERHCLFHSDEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYY
PKVYNLKYSKKPKTSGEDIVITGSYLRLFGGPNFLINSIDVNKPFVVKGNFSDPSFDCNN
ITVTFPPGSGKFRLYYDETGDNPVPFSYE---

---sklm*nqiikipqyllkmkry**lemkvervxsllqhslefvqdqvqh*pi*nq*fq
kfqplkiklkkvf*q*fvvivlqixsmqa*qfhqklflfhvi*nvvyhqmkylmiviqvk
lilqivilivyhaipvqv*kihqeyyxsyltqhhfnimsqlkklnyxhhqtlvkxmlkln
hpnhqmv***vxqlvvlvvlllsvllpitlkylfv*knl*vknfkkknvnlksqityv*n
*nltkskink*inkc*

Frame C:
kwkrk*yy*fyfcslyqdiq*ilqhq*mqymminhlh*flivishilpv*fciktkknpe
lkwhqiisivl*lmerdivysiqmnhsqdygvv*tvryvleinqillrivhlmlrv*yii
qkyti*nivknqkhlvki*sllahi*dylvvlislliplm*inllllkvislihlltvii
ll*hfhqdpenlgctmmklgiilyhfht---

---qs*ckik**kyxsicsr*kdins*r*k*refxlcynihwssfrtkynidlyktndfr
nsnh*k*n*kryfsnnswl*fyryxqcklnsfirncssfm*frm*fitk*nt****fk*n
*yyk**y*lfimpfrfkcekyirsiixpi*lniisi*chn*rn*ixsitkr*sxrc*n*i
iqtikwfnnrxynw*cwwcscyrcsclll*ntfscekiyr*kilkkkm*i*nhkshmcki
kt*lkvk*ink*invk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA208 (AHA208Q) /CSM/AH/AHA2-A/AHA208Q.Seq.d/                       1635   0.0
SHC243 (SHC243Q) /CSM/SH/SHC2-B/SHC243Q.Seq.d/                       1225   0.0
AHN746 (AHN746Q) /CSM/AH/AHN7-B/AHN746Q.Seq.d/                       1225   0.0
AHJ333 (AHJ333Q) /CSM/AH/AHJ3-B/AHJ333Q.Seq.d/                       1225   0.0
AHE606 (AHE606Q) /CSM/AH/AHE6-A/AHE606Q.Seq.d/                       1225   0.0
AHD222 (AHD222Q) /CSM/AH/AHD2-A/AHD222Q.Seq.d/                       1225   0.0
AHC117 (AHC117Q) /CSM/AH/AHC1-A/AHC117Q.Seq.d/                       1225   0.0
AHB666 (AHB666Q) /CSM/AH/AHB6-C/AHB666Q.Seq.d/                       1225   0.0
SHD571 (SHD571Q) /CSM/SH/SHD5-C/SHD571Q.Seq.d/                       1221   0.0
AHO612 (AHO612Q) /CSM/AH/AHO6-A/AHO612Q.Seq.d/                       1221   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.  1225   0.0    2
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.  1225   0.0    5
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.    80   4e-36  6
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    82   2e-15  16
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    40   2e-05  17
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    46   3e-05  18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-04  23
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   1e-04  15
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    34   2e-04  16
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    30   2e-04  19
dna update 2004. 2.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli...   413   e-114
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS...   365   2e-99
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   365   2e-99
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   361   3e-98
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   361   3e-98
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...   357   7e-97
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS...   354   5e-96
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS...   354   5e-96
FJ374944_1(FJ374944|pid:none) Dictyostelium discoideum strain QS...   354   5e-96
FJ374949_1(FJ374949|pid:none) Dictyostelium discoideum strain QS...   354   5e-96
protein update 2009. 4.26
PSORT 

 psg: 1.02  gvh: 0.77  alm: 0.33  top: 0.20  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: nuclear

>> prediction for AHA208 is exc
5' end seq. ID AHA208F
5' end seq. 
>AHA208F.Seq
AAAAATGGAAAAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTC
AATGAATCCTCCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTT
TAATAGTAATCTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAG
AACTGAAATGGCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTT
ATTCCATTCAGATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGT
TAGAGATAAATCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTA
TCCAAAAGTATACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGT
CATTACTGGCTCATATTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGA
TGTAAATAAACCTTTTGTTGTTAAAGGTAATTTCTCTGATCCATCTTTTGACTGTAATAA
TATTACTGTAACATTTCCACCAGGATCCGGAAAATTTAGGTTGTACTATGATGAAACTGG
GGATAATCCTGTACCATTTTCATACGAANNNNNNNNNN
Length of 5' end seq. 638
3' end seq. ID AHA208Z
3' end seq. 
>AHA208Z.Seq
NNNNNNNNNNTTCAAAGTTAATGTAAAATCAAATAATAAAAATACCNCAGTATTTGCTCA
AGATGAAAAGATATTAATAGTTAGAGATGAAAGTAGAGAGAGTTCNCTCTTTGTTACAAC
ATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTC
AGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTA
TAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTC
ATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGA
AACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAA
AAATACATCAGGAGTATTATATNTCCTATTTAACTCAACATCATTTCAATATAATGTCAC
AATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGTCAAANAGATGTTGAAACTAA
ATCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACAATTGGTAGTGTTGGTGGTGC
TCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAATACCTTTTCGTGTGAAAAAATTTAT
AGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACAAATCACATATGTGTAAA
ATTAAAACTTAACTAAAAGTAAAATAAATAAATAAATAAATAAATGTTAAA
Length of 3' end seq. 771
Connected seq. ID AHA208P
Connected seq. 
>AHA208P.Seq
AAAAATGGAAAAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTC
AATGAATCCTCCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTT
TAATAGTAATCTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAG
AACTGAAATGGCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTT
ATTCCATTCAGATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGT
TAGAGATAAATCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTA
TCCAAAAGTATACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGT
CATTACTGGCTCATATTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGA
TGTAAATAAACCTTTTGTTGTTAAAGGTAATTTCTCTGATCCATCTTTTGACTGTAATAA
TATTACTGTAACATTTCCACCAGGATCCGGAAAATTTAGGTTGTACTATGATGAAACTGG
GGATAATCCTGTACCATTTTCATACGAA----------TTCAAAGTTAATGTAAAATCAA
ATAATAAAAATACCNCAGTATTTGCTCAAGATGAAAAGATATTAATAGTTAGAGATGAAA
GTAGAGAGAGTTCNCTCTTTGTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAA
CATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAA
AAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAA
CAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATG
AAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTT
TATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTA
ACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAA
ACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAG
GTTNTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTTA
AAATACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAAT
TTAAAATCACAAATCACATATGTGTAAAATTAAAACTTAACTAAAAGTAAAATAAATAAA
TAAATAAATAAATGTTAAA
Length of connected seq. 1389
Full length Seq ID -
Full length Seq. -
Length of full length seq. -