VSB468
Library VS
(Link to library)
Clone ID VSB468
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14494-1
Original site URL
Representative seq. ID VSB468E
(Link to Original site)
Representative DNA sequence
>VSB468 (VSB468Q) /CSM/VS/VSB4-C/VSB468Q.Seq.d/
CTTTGCAACTACAGTGAATTCAAAATCTACCCAGCTCGTGGTATGAAATTCGTTAGAGGT
GACTCTAAAGTTTTCCACTTTATCAACACTAAAGTTGAATCTCTCTTCTTCAGAAAGATC
AACCCAAGAGATATTAGATGGTCAATGGTTTACCGTAGAACCTACAAAAACACCACCACT
GATGTTTCAGCCAAAAAGAAGGCCAGAAAGACCAAGAAAGTCGAAAGAAACATCGTCGGT
GCTTCATTAGAAGTCATCCAACAAAAACGTGCCCAAAAACCAGAAGTCAAACAAGCTGCT
GCCGAACAAGCCAAAAGAGAAATCAAAGAAAAGAAGAAAGCTGCTGCCAAAAAAGCTGCC
CCAAAAAAATAAATGATTAAATAAACGTTGGATCATTATTGTTTTA
sequence update 2000. 4. 6
Translated Amino Acid sequence
LCNYSEFKIYPARGMKFVRGDSKVFHFINTKVESLFFRKINPRDIRWSMVYRRTYKNTTT
DVSAKKKARKTKKVERNIVGASLEVIQQKRAQKPEVKQAAAEQAKREIKEKKKAAAKKAA
PKK*mik*tldhycf


Translated Amino Acid sequence (All Frames)
Frame A:
LCNYSEFKIYPARGMKFVRGDSKVFHFINTKVESLFFRKINPRDIRWSMVYRRTYKNTTT
DVSAKKKARKTKKVERNIVGASLEVIQQKRAQKPEVKQAAAEQAKREIKEKKKAAAKKAA
PKK*mik*tldhycf


Frame B:
fattvnskstqlvv*nslevtlkfstlstlklnlssserstqeildgqwftveptktppl
mfqpkrrperprksketssvlh*kssnknvpknqksnkllpnkpkekskkrrkllpkklp
qknk*lnkrwiiivl


Frame C:
lqlq*iqnlpsswyeir*r*l*sfplyqh*s*isllqkdqpkry*mvnglp*nlqkhhh*
cfsqkegqkdqesrkkhrrcfirshptktcpktrsqtsccrtsqkrnqrkeesccqkscp
kkind*invgsllf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSB468 (VSB468Q) /CSM/VS/VSB4-C/VSB468Q.Seq.d/ 640 0.0
VSI860 (VSI860Q) /CSM/VS/VSI8-C/VSI860Q.Seq.d/ 632 0.0
VSI713 (VSI713Q) /CSM/VS/VSI7-A/VSI713Q.Seq.d/ 632 0.0
VSI434 (VSI434Q) /CSM/VS/VSI4-B/VSI434Q.Seq.d/ 632 0.0
VSG792 (VSG792Q) /CSM/VS/VSG7-D/VSG792Q.Seq.d/ 632 0.0
VSG477 (VSG477Q) /CSM/VS/VSG4-D/VSG477Q.Seq.d/ 632 0.0
VSF626 (VSF626Q) /CSM/VS/VSF6-B/VSF626Q.Seq.d/ 632 0.0
VSF371 (VSF371Q) /CSM/VS/VSF3-C/VSF371Q.Seq.d/ 632 0.0
VSB728 (VSB728Q) /CSM/VS/VSB7-B/VSB728Q.Seq.d/ 632 0.0
VFL381 (VFL381Q) /CSM/VF/VFL3-D/VFL381Q.Seq.d/ 632 0.0

own update 2001.11.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL627236|AL627236.11 Mouse DNA sequence from clone RP23-384G12 on chromosome 4. 46 0.37 1
AC098488|AC098488.5 Rattus norvegicus clone CH230-97G19, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces. 38 0.57 3
AC104415|AC104415.1 Mus musculus clone RP24-142O17, LOW-PASS SEQUENCE SAMPLING. 36 1.7 2
AC015629|AC015629.2 Homo sapiens clone RP11-45L1, LOW-PASS SEQUENCE SAMPLING. 36 2.4 2
CC135901|CC135901.1 NDL.47I8.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.47I8, DNA sequence. 32 3.4 3
AC141741|AC141741.1 Apis mellifera clone CH224-58F12, WORKING DRAFT SEQUENCE, 15 unordered pieces. 42 5.8 1
AP006170|AP006170.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042B15, WORKING DRAFT SEQUENCE, 1 ordered piece. 42 5.8 1
AC132232|AC132232.3 Mus musculus chromosome UNK clone RP24-489N16, WORKING DRAFT SEQUENCE, 6 unordered pieces. 42 5.8 1
AU153683|AU153683.1 Homo sapiens cDNA clone:NT2RP3003742, 3' end, expressed in NT2 neuronal precursor cells after 2-weeks retinoic acid (RA) induction. 42 5.8 1
AC079221|AC079221.5 Mus musculus chromosome 11 clone CT7-549E22 map 11, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces. 42 5.8 1
dna update 2004. 1.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54VN6) RecName: Full=60S ribosomal protein L24; 159 4e-38
AE017347_304(AE017347|pid:none) Cryptococcus neoformans var. neo... 85 9e-16
(Q6C4U6) RecName: Full=60S ribosomal protein L24; &CR382131_968... 82 8e-15
(Q6BNC2) RecName: Full=60S ribosomal protein L24; &CR382137_107... 80 2e-14
FN392320_87(FN392320|pid:none) Pichia pastoris GS115 chromosome ... 80 2e-14
(P38665) RecName: Full=60S ribosomal protein L24; AltName: Full=... 80 3e-14
CP000497_512(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 79 4e-14
AP007166_115(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 79 5e-14
DQ213898_1(DQ213898|pid:none) Taeniopygia guttata clone 0061P001... 79 5e-14
BC078474_1(BC078474|pid:none) Xenopus laevis MGC85232 protein, m... 79 5e-14
protein update 2009. 7.28
PSORT

psg: 0.62 gvh: 0.33 alm: 0.53 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.04
nuc: 0.19 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for VSB468 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSB468E
Full length Seq.
>VSB468E.Seq
CTTTGCAACTACAGTGAATTCAAAATCTACCCAGCTCGTGGTATGAAATTCGTTAGAGGT
GACTCTAAAGTTTTCCACTTTATCAACACTAAAGTTGAATCTCTCTTCTTCAGAAAGATC
AACCCAAGAGATATTAGATGGTCAATGGTTTACCGTAGAACCTACAAAAACACCACCACT
GATGTTTCAGCCAAAAAGAAGGCCAGAAAGACCAAGAAAGTCGAAAGAAACATCGTCGGT
GCTTCATTAGAAGTCATCCAACAAAAACGTGCCCAAAAACCAGAAGTCAAACAAGCTGCT
GCCGAACAAGCCAAAAGAGAAATCAAAGAAAAGAAGAAAGCTGCTGCCAAAAAAGCTGCC
CCAAAAAAATAAATGATTAAATAAACGTTGGATCATTATTGTTTTA
Length of full length seq. 406