AHA190 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AHA190
Library	AH (Link to library)
Clone ID	AHA190 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16427-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHA1-D/AHA190Q.Seq.d/
Representative seq. ID	AHA190P (Link to Original site)
Representative DNA sequence	>AHA190 (AHA190Q) /CSM/AH/AHA1-D/AHA190Q.Seq.d/ GTGTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAAT AAAATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATT AGATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGAT CCAACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTAACAGCTGATTCAGCAAAT AATGTTCAAGAAAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCA CAAGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAA GAATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAA GGTAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCAAAATTATTAATTGGTATT GATAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAAT GATTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTAXXXXXXXXXXAAATTCTC AATCATGGAGAATAAAGAAGTTGTCGATCAATATTTAGCTCCAAACATCTCTCAGTTCCT TTCACTCTTACATGATGGTGATTTAATTGTTAGACGTAGTGCCCTCCTTTCATTGAATTA CATTGCTCACAATAAACCAAATCTCATTCGTAATGATCTCTCTGTCTATTTACCAATCTT GTACAACAATGCTAAAATCAAACCAGAACTCATTCGTGAAGTTGATCTTGGTCCATTCAA ACATAAGGTCGATGATGGTATTGAAATCAGAAAAACAGCTTTCGAATGTATGTACACTCT TTTGGATACCTCTATCGATAAGATCGATGTAGCTCCATTCATCGTTTCATTATGTGATGG TCTCAAAGATACCCAATACGATATCAAATTGTTATGTCATTTAATGATCATTCGTTTAGC AAACTCAAATGGTGCTGCTCTCCTCGAAAATATTACTCTCCTCCTTGAACCACTTCGTGT TATTCTCATGACTAAAGTAAATGAAACCGCTGTTAAACAACAAATCGAACGTAATGAAGA ATGTATTCGTTCAGCTTTACGTGCTGTCGCTTCCATCTCTAGAATTCCAAATAGTGATAG TATCGTTAAATTTGAAGAATTTGTTCAAAATACAATTCGTACAACTCCATTAGCTGCTCA ATTTAATTCAATTTTATCGAAGATACAATGTCAAATCAAGATTCAAG
sequence update	2002.10.25
Translated Amino Acid sequence	vlccvcilvdthyiyiYNKMSFFLGQILEKMGSIDKDIRFMATHDLANELEKDTFKMD PTYENKIVTKLLALTADSANNVQENVVKCLGLLIKRVKDSQATEIIDTLSKNILEESNKE ELVEISGIGLKTIITNLPSEGSSISTLVIKNLVPKLLIGIDSEKLKDKNEIKMSCLDILN DLLQKYGSFMIGDL--- ---KFSIMENKEVVDQYLAPNISQFLSLLHDGDLIVRRSALLSLNYIAHNKPNLIRNDLS VYLPILYNNAKIKPELIREVDLGPFKHKVDDGIEIRKTAFECMYTLLDTSIDKIDVAPFI VSLCDGLKDTQYDIKLLCHLMIIRLANSNGAALLENITLLLEPLRVILMTKVNETAVKQQ IERNEECIRSALRAVASISRIPNSDSIVKFEEFVQNTIRTTPLAAQFNSILSKIQCQIKI Q
Translated Amino Acid sequence (All Frames)	Frame A: vlccvcilvdthyiyiYNKMSFFLGQILEKMGSIDKDIRFMATHDLANELEKDTFKMD PTYENKIVTKLLALTADSANNVQENVVKCLGLLIKRVKDSQATEIIDTLSKNILEESNKE ELVEISGIGLKTIITNLPSEGSSISTLVIKNLVPKLLIGIDSEKLKDKNEIKMSCLDILN DLLQKYGSFMIGDL--- ---KFSIMENKEVVDQYLAPNISQFLSLLHDGDLIVRRSALLSLNYIAHNKPNLIRNDLS VYLPILYNNAKIKPELIREVDLGPFKHKVDDGIEIRKTAFECMYTLLDTSIDKIDVAPFI VSLCDGLKDTQYDIKLLCHLMIIRLANSNGAALLENITLLLEPLRVILMTKVNETAVKQQ IERNEECIRSALRAVASISRIPNSDSIVKFEEFVQNTIRTTPLAAQFNSILSKIQCQIKI Q Frame B: cdcvvcvfwlihiiyiyntikchffdrfkrwvpsikildswqlmilqmnkkillkwi qlmkikllqnyhqliqqimfkkmllnvvylkelkihkqqkllihyqkifknqikk nlkfqvlvkqslqiyqvkvvqfql*lkiyqnylvlivknkikmklkchvifm iyyksmdhllei--- ---nsqswrikklsinilqtslssfhsymmvilldvvpsfhitlltinqisfvmisl siyqscttmlksnqnsfvklilvhsnirsmmvlksekqlsnvctlfwiplsirsmlhss fhyvmvskipntisncyvisfvqtqmvllsskillsslnhfvlfslkmkpllnnk snvmknvfvqlyvlslpslefqivivslnlknlfkiqfvqlhllnliqfyrrynvksrf k Frame C: vivlcvyfgytlyiyiiqnviffrtdfrkdgfhrryihgnssckirkryfngs nlkncykiisinsfskcsrkccmfrfinksrftsnrnyyiikkyfrrikrr isnfrywfknnhykftkrfnfnfsnkfstkiinwy*kikrknnvmfryfk* fitkvwiiydwrf--- ---ilnhgerscrsifsskhlsvpftltwfnctcppfielhcsqtkshs*slc lftnlvqqcnqtrthssswsiqtgrwynqknsfrmyvhsfgylyrdrcssihr fimwsqrypiryqivmsfndhsfsklkwccsprkyysppttscyshdsknrcttn rtrmysfsftccrfhlnsk**yriricskynsynsiscsifnfiedtmsnqds
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AHA190 (AHA190Q) /CSM/AH/AHA1-D/AHA190Q.Seq.d/ 1505 0.0 AHF695 (AHF695Q) /CSM/AH/AHF6-D/AHF695Q.Seq.d/ 1469 0.0 SHJ830 (SHJ830Q) /CSM/SH/SHJ8-B/SHJ830Q.Seq.d/ 1400 0.0 VHB862 (VHB862Q) /CSM/VH/VHB8-C/VHB862Q.Seq.d/ 1398 0.0 CHM192 (CHM192Q) /CSM/CH/CHM1-D/CHM192Q.Seq.d/ 1398 0.0 AHE395 (AHE395Q) /CSM/AH/AHE3-D/AHE395Q.Seq.d/ 1398 0.0 SHL726 (SHL726Q) /CSM/SH/SHL7-B/SHL726Q.Seq.d/ 1396 0.0 VHQ485 (VHQ485Q) /CSM/VH/VHQ4-D/VHQ485Q.Seq.d/ 1394 0.0 CHF870 (CHF870Q) /CSM/CH/CHF8-C/CHF870Q.Seq.d/ 1394 0.0 AHK101 (AHK101Q) /CSM/AH/AHK1-A/AHK101Q.Seq.d/ 1394 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 1344 0.0 17 BX842643\|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 40 3e-06 17 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 4e-06 24 AR409405\|AR409405.1 Sequence 1 from patent US 6632935. 36 2e-05 22 BD061520\|BD061520.1 Genome DNA of symbiotic bacteria of aphid. 36 2e-05 22 AL929355\|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 40 2e-05 13 AP006628\|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 34 4e-05 28 AE014823\|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence. 38 3e-04 13 AC116988\|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 38 9e-04 16 AP004170\|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 36 0.001 18
dna update	2004. 2.22
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q86KD1) RecName: Full=Cullin-associated NEDD8-dissociated prote... 417 e-115 BT068509_1(BT068509\|pid:none) Zea mays full-length cDNA clone ZM... 195 3e-48 AK069128_1(AK069128\|pid:none) Oryza sativa Japonica Group cDNA c... 192 2e-47 BC004232_1(BC004232\|pid:none) Homo sapiens cullin-associated and... 192 2e-47 AK001791_1(AK001791\|pid:none) Homo sapiens cDNA FLJ10929 fis, cl... 192 2e-47 AB179357_1(AB179357\|pid:none) Macaca fascicularis testis cDNA cl... 192 2e-47 BC026220_1(BC026220\|pid:none) Homo sapiens cullin-associated and... 192 2e-47 AB020636_1(AB020636\|pid:none) Homo sapiens mRNA for KIAA0829 pro... 192 2e-47 AK292456_1(AK292456\|pid:none) Homo sapiens cDNA FLJ77762 complet... 192 2e-47 AL833880_1(AL833880\|pid:none) Homo sapiens mRNA; cDNA DKFZp434P1... 192 2e-47
protein update	2009. 4.26
PSORT	psg: 0.90 gvh: 0.44 alm: 0.36 top: 0.40 tms: 0.00 mit: 0.16 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 28.0 %: nuclear 20.0 %: cytoskeletal 4.0 %: vacuolar 4.0 %: peroxisomal >> prediction for AHA190 is cyt
5' end seq. ID	AHA190F
5' end seq.	>AHA190F.Seq GTGTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAAT AAAATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATT AGATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGAT CCAACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTAACAGCTGATTCAGCAAAT AATGTTCAAGAAAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCA CAAGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAA GAATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAA GGTAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCAAAATTATTAATTGGTATT GATAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAAT GATTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTANNNNNNNNNN
Length of 5' end seq.	592
3' end seq. ID	AHA190Z
3' end seq.	>AHA190Z.Seq NNNNNNNNNNAAATTCTCAATCATGGAGAATAAAGAAGTTGTCGATCAATATTTAGCTCC AAACATCTCTCAGTTCCTTTCACTCTTACATGATGGTGATTTAATTGTTAGACGTAGTGC CCTCCTTTCATTGAATTACATTGCTCACAATAAACCAAATCTCATTCGTAATGATCTCTC TGTCTATTTACCAATCTTGTACAACAATGCTAAAATCAAACCAGAACTCATTCGTGAAGT TGATCTTGGTCCATTCAAACATAAGGTCGATGATGGTATTGAAATCAGAAAAACAGCTTT CGAATGTATGTACACTCTTTTGGATACCTCTATCGATAAGATCGATGTAGCTCCATTCAT CGTTTCATTATGTGATGGTCTCAAAGATACCCAATACGATATCAAATTGTTATGTCATTT AATGATCATTCGTTTAGCAAACTCAAATGGTGCTGCTCTCCTCGAAAATATTACTCTCCT CCTTGAACCACTTCGTGTTATTCTCATGACTAAAGTAAATGAAACCGCTGTTAAACAACA AATCGAACGTAATGAAGAATGTATTCGTTCAGCTTTACGTGCTGTCGCTTCCATCTCTAG AATTCCAAATAGTGATAGTATCGTTAAATTTGAAGAATTTGTTCAAAATACAATTCGTAC AACTCCATTAGCTGCTCAATTTAATTCAATTTTATCGAAGATACAATGTCAAATCAAGAT TCAAG
Length of 3' end seq.	725
Connected seq. ID	AHA190P
Connected seq.	>AHA190P.Seq GTGTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAAT AAAATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATT AGATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGAT CCAACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTAACAGCTGATTCAGCAAAT AATGTTCAAGAAAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCA CAAGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAA GAATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAA GGTAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCAAAATTATTAATTGGTATT GATAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAAT GATTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTA----------AAATTCTC AATCATGGAGAATAAAGAAGTTGTCGATCAATATTTAGCTCCAAACATCTCTCAGTTCCT TTCACTCTTACATGATGGTGATTTAATTGTTAGACGTAGTGCCCTCCTTTCATTGAATTA CATTGCTCACAATAAACCAAATCTCATTCGTAATGATCTCTCTGTCTATTTACCAATCTT GTACAACAATGCTAAAATCAAACCAGAACTCATTCGTGAAGTTGATCTTGGTCCATTCAA ACATAAGGTCGATGATGGTATTGAAATCAGAAAAACAGCTTTCGAATGTATGTACACTCT TTTGGATACCTCTATCGATAAGATCGATGTAGCTCCATTCATCGTTTCATTATGTGATGG TCTCAAAGATACCCAATACGATATCAAATTGTTATGTCATTTAATGATCATTCGTTTAGC AAACTCAAATGGTGCTGCTCTCCTCGAAAATATTACTCTCCTCCTTGAACCACTTCGTGT TATTCTCATGACTAAAGTAAATGAAACCGCTGTTAAACAACAAATCGAACGTAATGAAGA ATGTATTCGTTCAGCTTTACGTGCTGTCGCTTCCATCTCTAGAATTCCAAATAGTGATAG TATCGTTAAATTTGAAGAATTTGTTCAAAATACAATTCGTACAACTCCATTAGCTGCTCA ATTTAATTCAATTTTATCGAAGATACAATGTCAAATCAAGATTCAAG
Length of connected seq.	1297
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas