NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB366
Library VS
(Link to library)
Clone ID VSB366
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15185-1
Original site URL
Representative seq. ID VSB366E
(Link to Original site)
Representative DNA sequence 
>VSB366 (VSB366Q) /CSM/VS/VSB3-C/VSB366Q.Seq.d/
AGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAG
TTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATG
CCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTG
GTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTC
TCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAGGACCAATATA
CACTGGTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 2000. 3.16
Translated Amino Acid sequence 
KVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAG
GAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
rkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsgnvtvavkf*l
vvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*kikkkkkkkkk


Frame B:
esrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtfirwylem*rlp*sfsw
wcldyvncrwchc*inyqtsqrvk*lnhlymk*nksgpiytgfkk*kkkkkkkkk


Frame C:
KVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAG
GAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK445 (VSK445Q) /CSM/VS/VSK4-B/VSK445Q.Seq.d/                        615   e-175
VSK444 (VSK444Q) /CSM/VS/VSK4-B/VSK444Q.Seq.d/                        615   e-175
VSK116 (VSK116Q) /CSM/VS/VSK1-A/VSK116Q.Seq.d/                        615   e-175
VSI473 (VSI473Q) /CSM/VS/VSI4-D/VSI473Q.Seq.d/                        615   e-175
VSI440 (VSI440Q) /CSM/VS/VSI4-B/VSI440Q.Seq.d/                        615   e-175
VSI243 (VSI243Q) /CSM/VS/VSI2-B/VSI243Q.Seq.d/                        615   e-175
VSH888 (VSH888Q) /CSM/VS/VSH8-D/VSH888Q.Seq.d/                        615   e-175
VSH738 (VSH738Q) /CSM/VS/VSH7-B/VSH738Q.Seq.d/                        615   e-175
VSH330 (VSH330Q) /CSM/VS/VSH3-B/VSH330Q.Seq.d/                        615   e-175
VSG249 (VSG249Q) /CSM/VS/VSG2-C/VSG249Q.Seq.d/                        615   e-175
own update 2001.11.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL116011|AL116011.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78   5e-13  2
AL116009|AL116009.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78   5e-13  2
AL115603|AL115603.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78   5e-13  2
AL112083|AL112083.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78   5e-13  2
AL112069|AL112069.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78   5e-13  2
AL110769|AL110769.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78   5e-13  2
AL111042|AL111042.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78   5e-13  2
CD645651|CD645651.1 SSPG610 SS pectin Sclerotinia sclerotiorum cDNA similar to 60S ribosomal protein L37a, mRNA sequence.    78   8e-13  2
AL114982|AL114982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78   8e-13  2
BX561419|BX561419.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse55g03_q1c.    52   3e-11  2
dna update 2004. 1.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UG4) RecName: Full=60S ribosomal protein L37a;  &JE0321(JE03...   173   2e-42
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri...   138   7e-32
(O61462) RecName: Full=60S ribosomal protein L37a;  &AF040712_1(...   137   9e-32
A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633.  &C...   137   2e-31
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso...   136   3e-31
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom...   135   4e-31
AM049131_1(AM049131|pid:none) Cicindela littoralis mRNA for ribo...   135   4e-31
EU125030_1(EU125030|pid:none) Eurythoe complanata ribosomal prot...   135   4e-31
(O61598) RecName: Full=60S ribosomal protein L37a;  &AF052737_1(...   135   6e-31
AM049130_1(AM049130|pid:none) Agriotes lineatus mRNA for ribosom...   134   8e-31
protein update 2009. 7.28
PSORT 

 psg: 0.55  gvh: 0.34  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSB366 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSB366E
Full length Seq. 
>VSB366E.Seq
AGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAG
TTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATG
CCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTG
GTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTC
TCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAGGACCAATATA
CACTGGTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 346