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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA183
Library AH
(Link to library)
Clone ID AHA183
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID AHA183P
(Link to Original site)
Representative DNA sequence 
>AHA183 (AHA183Q) /CSM/AH/AHA1-D/AHA183Q.Seq.d/
ATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCT
TTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAA
AAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCT
CCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAAT
CTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATG
GCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCA
GATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAA
TCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTA
TACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGC
TCATATTTAAGATXXXXXXXXXXCATTCATTGGAGTTCGTTCAGGACCAAGTACAACATT
GACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGG
TATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGT
TTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAAT
ACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATC
ATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTC
AACATCATTTCAATATAATGTCGCAATTGAAGAAATTAAATTATNTCCATCACCAAACGT
TAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTN
TACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTNTTGCCTATTACTTTAAAAT
ACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAA
AATCACAAATCACATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAAA
TAAATAAATG
sequence update 2002.10.25
Translated Amino Acid sequence 
iylikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNP
PTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHS
DEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITG
SYLR---

---FIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSETV
PLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSFQY
NVAIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGALAIGAXAYYFKIPFRVK
KFIGKKF*kkkckfkitnhicvklkln*k*nk*ink*m
Translated Amino Acid sequence (All Frames) 
Frame A:
iylikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNP
PTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHS
DEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITG
SYLR---

---hslefvqdqvqh*pi*nq*fqkfqplkiklkkvf*q*fvvivlqixsmqa*qfhqkl
flfhvi*nvvyhqmkylmiviqvklilqivilivyhaipvqv*kihqeyyxsyltqhhfn
imsqlkklnyxhhqtlvkxmlklnhpnhqmv***vxqlvvlvvlllsvllpitlkylfv*
knl*vknfkkknvnlksqityv*n*nltknkink*ink

Frame B:
si**klnfpkiikflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*il
qhq*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiq
mnhsqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki*slla
hi*d---

---ihwssfrtkynidlyktndfrnsnh*k*n*kryfsnnswl*fyryxqcklnsfirnc
ssfm*frm*fitk*nt****fk*n*yyk**y*lfimpfrfkcekyirsiixpi*lniisi
*crn*rn*ixsitkr*sxrc*n*iiqtikwfnnrxynw*cwwcscyrcxclll*ntfsce
kiyr*kilkkkm*i*nhkshmckikt*lkik*ink*in

Frame C:
lfnkn*iflk*lnfsfliffykny*kakfkikkiidkngkennitdfifvlyirifness
ntnrcni***iiyinf***spifypfnfv*krkrtqn*ngtklfqlfss*wretlfipfr
*tilkimg*yrq*gmc*r*ikyc*glyi*cfgfsilsksiqfei**ktkniw*ryshywl
ifk---

---FIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSETV
PLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSFQY
NVAIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGALAIGAXAYYFKIPFRVK
KFIGKKF*kkkckfkitnhicvklkln*k*nk*ink*m
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA183 (AHA183Q) /CSM/AH/AHA1-D/AHA183Q.Seq.d/                       1059   0.0
SHL649 (SHL649Q) /CSM/SH/SHL6-C/SHL649Q.Seq.d/                       1007   0.0
SHJ608 (SHJ608Q) /CSM/SH/SHJ6-A/SHJ608Q.Seq.d/                       1007   0.0
SHJ589 (SHJ589Q) /CSM/SH/SHJ5-D/SHJ589Q.Seq.d/                       1007   0.0
SHE141 (SHE141Q) /CSM/SH/SHE1-B/SHE141Q.Seq.d/                       1007   0.0
SHD314 (SHD314Q) /CSM/SH/SHD3-A/SHD314Q.Seq.d/                       1007   0.0
SHC854 (SHC854Q) /CSM/SH/SHC8-C/SHC854Q.Seq.d/                       1007   0.0
SHC758 (SHC758Q) /CSM/SH/SHC7-C/SHC758Q.Seq.d/                       1007   0.0
SHC478 (SHC478Q) /CSM/SH/SHC4-D/SHC478Q.Seq.d/                       1007   0.0
SHC410 (SHC410Q) /CSM/SH/SHC4-A/SHC410Q.Seq.d/                       1007   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.  1007   0.0    3
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.  1007   0.0    4
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.    80   2e-24  5
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   0.002  13
U30821|U30821.1 Cyanophora paradoxa cyanelle, complete genome.     36   0.003  9
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    42   0.005  14
AL935175|AL935175.6 Mouse DNA sequence from clone RP23-397E13 on chromosome 2.    38   0.007  8
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    46   0.021  15
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   0.035  13
AC094308|AC094308.10 Rattus norvegicus clone CH230-3G2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50   0.075  1
dna update 2004. 2.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli...   305   2e-81
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   295   2e-78
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   295   2e-78
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...   295   2e-78
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS...   295   2e-78
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   295   2e-78
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...   295   3e-78
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS...   282   2e-74
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...   282   2e-74
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...   282   2e-74
protein update 2009. 4.26
PSORT 

 psg: 1.02  gvh: 0.77  alm: 0.33  top: 0.07  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	 12.0 %: vacuolar
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for AHA183 is exc
5' end seq. ID AHA183F
5' end seq. 
>AHA183F.Seq
ATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCT
TTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAA
AAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCT
CCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAAT
CTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATG
GCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCA
GATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAA
TCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTA
TACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGC
TCATATTTAAGATNNNNNNNNNN
Length of 5' end seq. 563
3' end seq. ID AHA183Z
3' end seq. 
>AHA183Z.Seq
NNNNNNNNNNCATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATATAAAA
CCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATA
ATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAGAAACT
GTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATGATAGT
GATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATTCCGGT
TCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCAACATCATTTCAA
TATAATGTCGCAATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGTCAAANAGAT
GTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACAATTGGTAGT
GTTGGTGGTGCTCTTGCTATCGGTGCTNTTGCCTATTACTTTAAAATACCTTTTCGTGTG
AAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACAAATCAC
ATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAAATAAATAAATG
Length of 3' end seq. 657
Connected seq. ID AHA183P
Connected seq. 
>AHA183P.Seq
ATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCT
TTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAA
AAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCT
CCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAAT
CTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATG
GCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCA
GATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAA
TCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTA
TACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGC
TCATATTTAAGAT----------CATTCATTGGAGTTCGTTCAGGACCAAGTACAACATT
GACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGG
TATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGT
TTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAAT
ACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATC
ATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTC
AACATCATTTCAATATAATGTCGCAATTGAAGAAATTAAATTATNTCCATCACCAAACGT
TAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTN
TACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTNTTGCCTATTACTTTAAAAT
ACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAA
AATCACAAATCACATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAAA
TAAATAAATG
Length of connected seq. 1200
Full length Seq ID -
Full length Seq. -
Length of full length seq. -