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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB252
Library VS
(Link to library)
Clone ID VSB252
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15608-1
Original site URL
Representative seq. ID VSB252Z
(Link to Original site)
Representative DNA sequence 
>VSB252 (VSB252Q) /CSM/VS/VSB2-C/VSB252Q.Seq.d/
XXXXXXXXXXAAGATTGATTCAGCAAATAATCAAATTAAAATGTTTACTCAACATAATTC
CTATCGTCAAGTTATGGATAAGACAAAAGCATTATTTAATCGTGGTATCGAAATGGTCGT
AGGTATCAATGAATCTAGAAGTCAACAAAATAGAAAAGGTGGTGATAACCGTAAGAATCA
ACGTGGTCAAAATTGAAATCAACAAAATCAACAAAACCAACAATCTAATGAATCAAATGA
AACAACAACAACAACAACAACTGCAGCAGCAGCAACAACAACAACTACTACAACTGCAAC
TCCAACTTCCGCTTAAATTTTATTATTAAAATTTTAATAACACACACTCATCCATCCACC
ATCATCTGAAATAATAAAATCACGCCGCACACTCCGCACCCACATCCGCACCCACATCCG
CACCCATCACTTTCACATTTATTCATTCATTCATTTAATATTAATATAGATAGAGATAAC
GATATAGATATATAATATCAAATGATACTATTTGTTGATCGATTTTTATATAAAAAAAGA
AAAAAAGTTAAAAAAAAAAAATAAAAAAAT
sequence update 2000. 4. 6
Translated Amino Acid sequence 
---rliqqiiklkcllniipivklwirqkhylivvskws*VSMNLEVNKIEKVVITVRIN
VVKIEINKINKTNNLMNQMKQQQQQQLQQQQQQQLLQLQLQLPLKFYY*nfnnthssihh
hlk**nhaahsaptsaptsapitftfihsfi*y*yr*r*ryryiisndtic*sifi*kkk
ks*kkkikk
Translated Amino Acid sequence (All Frames) 
Frame A:
---rliqqiiklkcllniipivklwirqkhylivvskws*VSMNLEVNKIEKVVITVRIN
VVKIEINKINKTNNLMNQMKQQQQQQLQQQQQQQLLQLQLQLPLKFYY*nfnnthssihh
hlk**nhaahsaptsaptsapitftfihsfi*y*yr*r*ryryiisndtic*sifi*kkk
ks*kkkikk


Frame B:
---d*fsk*sn*nvyst*flsssyg*dksii*swyrngrryq*i*kstk*krw**p*est
wsklkstkstkpti**ik*nnnnnnncsssnnnnyyncnsnfrlnfiikiliththpsti
i*nnkitphtphphphphphpslshlfihsfninidrdndidi*yqmilfvdrflykkrk
kvkkkk*kn


Frame C:
---idsannqikmftqhnsyrqvmdktkalfnrgiemvvginesrsqqnrkggdnrknqr
gqn*nqqnqqnqqsnesnetttttttaaaatttttttatptsa*illlkf**htlihpps
seiiksrrtlrthirthirthhfhiysfihlili*ieiti*iynik*yyllidfyikkek
klkkknkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB252 (VSB252Q) /CSM/VS/VSB2-C/VSB252Q.Seq.d/                        361   8e-99
VFG167 (VFG167Q) /CSM/VF/VFG1-C/VFG167Q.Seq.d/                        361   8e-99
VFA355 (VFA355Q) /CSM/VF/VFA3-C/VFA355Q.Seq.d/                        361   8e-99
AFI289 (AFI289Q) /CSM/AF/AFI2-D/AFI289Q.Seq.d/                        361   8e-99
CFE173 (CFE173Q) /CSM/CF/CFE1-D/CFE173Q.Seq.d/                        339   3e-92
VHB534 (VHB534Q) /CSM/VH/VHB5-B/VHB534Q.Seq.d/                        329   3e-89
VSE734 (VSE734Q) /CSM/VS/VSE7-B/VSE734Q.Seq.d/                        301   6e-81
VFN301 (VFN301Q) /CSM/VF/VFN3-A/VFN301Q.Seq.d/                        291   6e-78
VFE495 (VFE495Q) /CSM/VF/VFE4-D/VFE495Q.Seq.d/                        276   3e-73
VFG684 (VFG684Q) /CSM/VF/VFG6-D/VFG684Q.Seq.d/                        258   8e-68
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI592032|BI592032.1 RH09633.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH09633 5, mRNA sequence.    58  1e-04  1
BI626736|BI626736.1 RH67775.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH67775 5, mRNA sequence.    58  1e-04  1
AY119230|AY119230.1 Drosophila melanogaster SD17695 full insert cDNA.    58  1e-04  1
AC019823|AC019823.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    58  1e-04  1
BI607928|BI607928.1 RH12029.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH12029 5, mRNA sequence.    58  1e-04  1
BD106609|BD106609.1 Zinc finger protein derivatives and methods therefor.    40  0.002  2
AR156901|AR156901.1 Sequence 43 from patent US 6242568.           40  0.002  2
AR117905|AR117905.1 Sequence 43 from patent US 6140466.           40  0.002  2
AX429854|AX429854.1 Sequence 46 from Patent WO0206463.            40  0.002  2
AX429841|AX429841.1 Sequence 33 from Patent WO0206463.            40  0.002  2
dna update 2003. 8.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54CC5) RecName: Full=Eukaryotic translation initiation factor ...   107   3e-22
protein update 2009. 3.19
PSORT 

 psg: 0.75  gvh: 0.13  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VSB252 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSB252Z
3' end seq. 
>VSB252Z.Seq
----------AAGATTGATTCAGCAAATAATCAAATTAAAATGTTTACTCAACATAATTC
CTATCGTCAAGTTATGGATAAGACAAAAGCATTATTTAATCGTGGTATCGAAATGGTCGT
AGGTATCAATGAATCTAGAAGTCAACAAAATAGAAAAGGTGGTGATAACCGTAAGAATCA
ACGTGGTCAAAATTGAAATCAACAAAATCAACAAAACCAACAATCTAATGAATCAAATGA
AACAACAACAACAACAACAACTGCAGCAGCAGCAACAACAACAACTACTACAACTGCAAC
TCCAACTTCCGCTTAAATTTTATTATTAAAATTTTAATAACACACACTCATCCATCCACC
ATCATCTGAAATAATAAAATCACGCCGCACACTCCGCACCCACATCCGCACCCACATCCG
CACCCATCACTTTCACATTTATTCATTCATTCATTTAATATTAATATAGATAGAGATAAC
GATATAGATATATAATATCAAATGATACTATTTGTTGATCGATTTTTATATAAAAAAAGA
AAAAAAGTTAAAAAAAAAAAATAAAAAAAT
Length of 3' end seq. 560
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -