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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB234
Library VS
(Link to library)
Clone ID VSB234
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16494-1
Original site URL
Representative seq. ID VSB234E
(Link to Original site)
Representative DNA sequence 
>VSB234 (VSB234Q) /CSM/VS/VSB2-B/VSB234Q.Seq.d/
AAAATGCCATCCAATAAAACATTAAAAATTAAAAAGATTTTAGGCAAAAAGCAAAAGCAA
AACAGACCAGTCCCACAATGGATTCGTTTAAGAACTGATAACACCATCAGATACAATAAC
AAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTAAACGCCTCAGTGCAAGCTTATT
GGAACATATCGATCATTATATATTTTAATAAAATTGATCTTTTGGACGTTTAACAAAAAA
AAAAAAAAAAAAAAAAAA
sequence update 2000. 3.29
Translated Amino Acid sequence 
KMPSNKTLKIKKILGKKQKQNRPVPQWIRLRTDNTIRYNNKRRHWRRTKLGI*tpqckli
gtyrslyiliklifwtfnkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
KMPSNKTLKIKKILGKKQKQNRPVPQWIRLRTDNTIRYNNKRRHWRRTKLGI*tpqckli
gtyrslyiliklifwtfnkkkkkkkk


Frame B:
kchpikh*klkrf*aksksktdqshngfv*elitpsdtitnvdigdvqslvskrlsasll
ehidhyif**n*sfgrltkkkkkkk


Frame C:
naiq*nikn*kdfrqkakakqtsptmdsfkn**hhqiq*qt*tletykawylnasvqayw
nisiiiyfnkidlldv*qkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK412 (VSK412Q) /CSM/VS/VSK4-A/VSK412Q.Seq.d/                        341   3e-93
VSK409 (VSK409Q) /CSM/VS/VSK4-A/VSK409Q.Seq.d/                        341   3e-93
VSJ763 (VSJ763Q) /CSM/VS/VSJ7-C/VSJ763Q.Seq.d/                        341   3e-93
VSJ544 (VSJ544Q) /CSM/VS/VSJ5-B/VSJ544Q.Seq.d/                        341   3e-93
VSJ541 (VSJ541Q) /CSM/VS/VSJ5-B/VSJ541Q.Seq.d/                        341   3e-93
VSJ417 (VSJ417Q) /CSM/VS/VSJ4-A/VSJ417Q.Seq.d/                        341   3e-93
VSJ185 (VSJ185Q) /CSM/VS/VSJ1-D/VSJ185Q.Seq.d/                        341   3e-93
VSI602 (VSI602Q) /CSM/VS/VSI6-A/VSI602Q.Seq.d/                        341   3e-93
VSI566 (VSI566Q) /CSM/VS/VSI5-C/VSI566Q.Seq.d/                        341   3e-93
VSI565 (VSI565Q) /CSM/VS/VSI5-C/VSI565Q.Seq.d/                        341   3e-93
own update 2001.11.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL110967|AL110967.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52   0.004  1
AL114405|AL114405.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52   0.004  1
AL117142|AL117142.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52   0.004  1
AL114232|AL114232.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52   0.004  1
AL114078|AL114078.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52   0.004  1
AL112311|AL112311.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52   0.004  1
AL111373|AL111373.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52   0.004  1
AL115377|AL115377.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52   0.004  1
AL114313|AL114313.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52   0.004  1
AL115802|AL115802.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52   0.004  1
dna update 2004. 1.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY961478_1(AY961478|pid:none) Phytophthora infestans clone MY-09...    70   3e-11
FM992688_598(FM992688|pid:none) Candida dubliniensis CD36 chromo...    68   9e-11
(Q96W55) RecName: Full=60S ribosomal protein L39; AltName: Full=...    68   9e-11
FJ362595_1(FJ362595|pid:none) Vernicia fordii 60S ribosomal prot...    67   2e-10
AP003019_37(AP003019|pid:none) Oryza sativa Japonica Group genom...    67   2e-10
(P51425) RecName: Full=60S ribosomal protein L39;  &(P51426) Rec...    67   2e-10
CP000583_325(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...    66   3e-10
EU952793_1(EU952793|pid:none) Zea mays clone 1289591 60S ribosom...    66   3e-10
CU633900_605(CU633900|pid:none) Podospora anserina genomic DNA c...    66   4e-10
(Q8L8W6) RecName: Full=60S ribosomal protein L39-2;  &AK118748_1...    66   4e-10
protein update 2009. 7.28
PSORT 

 psg: 0.42  gvh: 0.07  alm: 0.74  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.00
 nuc: 0.27  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: nuclear

>> prediction for VSB234 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSB234E
Full length Seq. 
>VSB234E.Seq
AAAATGCCATCCAATAAAACATTAAAAATTAAAAAGATTTTAGGCAAAAAGCAAAAGCAA
AACAGACCAGTCCCACAATGGATTCGTTTAAGAACTGATAACACCATCAGATACAATAAC
AAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTAAACGCCTCAGTGCAAGCTTATT
GGAACATATCGATCATTATATATTTTAATAAAATTGATCTTTTGGACGTTTAACAAAAAA
AAAAAAAAAAAAAAAAAA
Length of full length seq. 258