NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA181
Library AH
(Link to library)
Clone ID AHA181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16336-1
Original site URL
Representative seq. ID AHA181P
(Link to Original site)
Representative DNA sequence 
>AHA181 (AHA181Q) /CSM/AH/AHA1-D/AHA181Q.Seq.d/
ACTGTTGGCCTACTGGNATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTG
ACCTCATCAGAGGTATTAGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTA
TAAATGAAATTAAAGAAGAATTAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAA
AATTAACATATATTCAAATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTG
AAGTTATGAGTTGTAATAAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAA
GTTTTAATGAAGGAACAGATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCT
TATCATCGAATCAAAGTGAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAA
CCGATTTAGCAAGAGAGTTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACAC
ATATTTTAAAGAGAGCCATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGC
TAAGACCAGCATTCCCAAAGTTAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTAT
CATGCTCAGTCAATGTGATTTGCGAACTTGCCAGAAGAAATCCAAAGAACTATTTACCAX
XXXXXXXXXATCACGTTTANCAATTTTCACTCATAGTATTTACNTAAATGTACAAGAACG
TGCTTGTCTTATTAATGAATTATTATCATTCTACACAGTCACTAAAGAACAAGGTAATAA
TATTTCAAAGGAGTTAATTTCATTGTTCACAGAACAATTAAATCCAGTTGGTCCAAAAGC
TCAAAAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAATGGATTAATGATCCAAA
ACATCAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTCAATACAAGTACATCTAG
TCATCAAAAGAAACATCACAAACATCACCGTGGAGGATATGATGGTGATGATGATGAAGA
TGATGAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAATTTCAATCGTCATCCAAT
TGATATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCTAATAATCCATATATGTT
GGGTGGTAAAGTATCAAAGAAATTATCAACCAATGATCCTGAAAATATTCCAGTGGTCCA
ACTAACTGGTGATTTAGGTCATCTTCATGTTGGTGCATCATCAAATAGACCAATGCCATC
AAAAGGTAGTAAAAAAACAAAAAAACATTATACCATCGATACTACCACNAAATGCCAGAG
GGGCAAAAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
CWPTGIHQKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQK
LTYIQMLGFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFL
SSNQSEAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESL
RPAFPKLREKLDDPEPSVVSCSVNVICELARRNPKNYLP---

---SRLXIFTHSIYXNVQERACLINELLSFYTVTKEQGNNISKELISLFTEQLNPVGPKA
QKKVPIPEGLDLDEWINDPKHQEPIEEDEDDDIFNTSTSSHQKKHHKHHRGGYDGDDDED
DETNSSHSGHSSSNFNRHPIDIQRQKEERLRKQANNPYMLGGKVSKKLSTNDPENIPVVQ
LTGDLGHLHVGASSNRPMPSKGSKKTKKHYTIDTTTKCQRGKR
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxftkny*kclkehwltssevletikrmklnl*inv*mklkkn*kvickkrqlpsk
n*hifkc*dlilvghhlkllkl*vvinfhqkeldi*qhhkvlmkeqmllywqlikleris
yhrikvkpi*h*ivfqifvqpi*qeswqmis*hy*vhkkhif*repsrcyirys*diqnr
*dqhsqs*ernwmipshrlyhaqsm*fanlpeeiqrtiy---

---itfxnfhs*ylxkctrtclsy**iiiilhsh*rtr**yfkgvnfivhrtiksswsks
skestnsrrfrfr*md**sktsrtn*rg*r**yfqykyi*ssketsqtspwri*w****r
**nq*fsfrsfk**fqsssn*ysktkgrkikkts**siyvgw*sikeiinq*s*kyssgp
tnw*frssscwciik*tnaikr**knkktlyhryyhxmpegqk

Frame B:
llaywxspktienv*knig*phqry*kp*ke*n*iyksmyk*n*rrikr*yakkdscrpk
iniysnvri*y*lgii*nc*syel**ifikknwifssitkf**rnrcycignssn*kgfl
iiesk*slfsielsfkylynrfskrvgk*ypniieytkntyfkeshhgvi*dileisria
ktsipkvkreig*sraigcimlsqcdlrtcqkkskelft---

---SRLXIFTHSIYXNVQERACLINELLSFYTVTKEQGNNISKELISLFTEQLNPVGPKA
QKKVPIPEGLDLDEWINDPKHQEPIEEDEDDDIFNTSTSSHQKKHHKHHRGGYDGDDDED
DETNSSHSGHSSSNFNRHPIDIQRQKEERLRKQANNPYMLGGKVSKKLSTNDPENIPVVQ
LTGDLGHLHVGASSNRPMPSKGSKKTKKHYTIDTTTKCQRGKR

Frame C:
CWPTGIHQKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQK
LTYIQMLGFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFL
SSNQSEAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESL
RPAFPKLREKLDDPEPSVVSCSVNVICELARRNPKNYLP---

---hvxqfslivft*myknvlvllmnyyhstqslknkviifqrs*fhcsqnn*iqlvqkl
krkyqfqkv*i*mnglmiqniknqlkrmkmmifsiqvhlvikrnitnitvedmmvmmmkm
mkpivliqviqvvisiviqlifkdkrkkd*enkliihicwvvkyqrnyqpmilkifqwsn
*lvi*vifmlvhhqidqchqkvvkkqkniipsilpxnargak
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA181 (AHA181Q) /CSM/AH/AHA1-D/AHA181Q.Seq.d/                       1853   0.0
AFG322 (AFG322Q) /CSM/AF/AFG3-A/AFG322Q.Seq.d/                       1217   0.0
VHO578 (VHO578Q) /CSM/VH/VHO5-D/VHO578Q.Seq.d/                       1181   0.0
SHB371 (SHB371Q) /CSM/SH/SHB3-C/SHB371Q.Seq.d/                       1174   0.0
CHE687 (CHE687Q) /CSM/CH/CHE6-D/CHE687Q.Seq.d/                       1172   0.0
AHO212 (AHO212Q) /CSM/AH/AHO2-A/AHO212Q.Seq.d/                       1172   0.0
AHI342 (AHI342Q) /CSM/AH/AHI3-B/AHI342Q.Seq.d/                       1170   0.0
SHH419 (SHH419Q) /CSM/SH/SHH4-A/SHH419Q.Seq.d/                       1168   0.0
AFG346 (AFG346Q) /CSM/AF/AFG3-B/AFG346Q.Seq.d/                       1162   0.0
SHA829 (SHA829Q) /CSM/SH/SHA8-B/SHA829Q.Seq.d/                       1160   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    32   3e-06  18
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    40   1e-05  19
AC021603|AC021603.3 Homo sapiens clone RP11-215E12, WORKING DRAFT SEQUENCE, 32 unordered pieces.    44   4e-05  8
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           40   7e-05  28
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   7e-05  16
BJ615522|BJ615522.1 Xenopus laevis cDNA clone:XL172g12, 5' end.    50   4e-04  2
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    36   0.004  20
AE010193|AE010193.1 Pyrococcus furiosus DSM 3638, section 68 of 173 of the complete genome.    36   0.004  5
BX649533|BX649533.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    54   0.005  1
AL935329|AL935329.11 Zebrafish DNA sequence from clone CH211-253P2 in linkage group 12.    54   0.005  1
dna update 2004. 2.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005142_1(BC005142|pid:none) Homo sapiens adaptor-related prote...   275   2e-72
BC010065_1(BC010065|pid:none) Homo sapiens adaptor-related prote...   275   2e-72
AB384738_1(AB384738|pid:none) Synthetic construct DNA, clone: pF...   275   2e-72
(O14617) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   275   2e-72
AB015979_1(AB015979|pid:none) Bos taurus mRNA for adaptor relate...   273   7e-72
AK141789_1(AK141789|pid:none) Mus musculus 9 days embryo whole b...   273   1e-71
AK155518_1(AK155518|pid:none) Mus musculus NOD-derived CD11c +ve...   273   1e-71
(O54774) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   273   1e-71
BC037477_1(BC037477|pid:none) Mus musculus adaptor-related prote...   273   1e-71
BC154680_1(BC154680|pid:none) Xenopus tropicalis adaptor-related...   271   4e-71
protein update 2009. 4.26
PSORT 

 psg: 0.59  gvh: 0.42  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.13  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for AHA181 is cyt
5' end seq. ID AHA181F
5' end seq. 
>AHA181F.Seq
ACTGTTGGCCTACTGGNATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTG
ACCTCATCAGAGGTATTAGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTA
TAAATGAAATTAAAGAAGAATTAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAA
AATTAACATATATTCAAATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTG
AAGTTATGAGTTGTAATAAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAA
GTTTTAATGAAGGAACAGATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCT
TATCATCGAATCAAAGTGAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAA
CCGATTTAGCAAGAGAGTTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACAC
ATATTTTAAAGAGAGCCATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGC
TAAGACCAGCATTCCCAAAGTTAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTAT
CATGCTCAGTCAATGTGATTTGCGAACTTGCCAGAAGAAATCCAAAGAACTATTTACCAN
NNNNNNNNN
Length of 5' end seq. 669
3' end seq. ID AHA181Z
3' end seq. 
>AHA181Z.Seq
NNNNNNNNNNATCACGTTTANCAATTTTCACTCATAGTATTTACNTAAATGTACAAGAAC
GTGCTTGTCTTATTAATGAATTATTATCATTCTACACAGTCACTAAAGAACAAGGTAATA
ATATTTCAAAGGAGTTAATTTCATTGTTCACAGAACAATTAAATCCAGTTGGTCCAAAAG
CTCAAAAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAATGGATTAATGATCCAA
AACATCAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTCAATACAAGTACATCTA
GTCATCAAAAGAAACATCACAAACATCACCGTGGAGGATATGATGGTGATGATGATGAAG
ATGATGAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAATTTCAATCGTCATCCAA
TTGATATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCTAATAATCCATATATGT
TGGGTGGTAAAGTATCAAAGAAATTATCAACCAATGATCCTGAAAATATTCCAGTGGTCC
AACTAACTGGTGATTTAGGTCATCTTCATGTTGGTGCATCATCAAATAGACCAATGCCAT
CAAAAGGTAGTAAAAAAACAAAAAAACATTATACCATCGATACTACCACNAAATGCCAGA
GGGGCAAAAGA
Length of 3' end seq. 671
Connected seq. ID AHA181P
Connected seq. 
>AHA181P.Seq
ACTGTTGGCCTACTGGNATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTG
ACCTCATCAGAGGTATTAGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTA
TAAATGAAATTAAAGAAGAATTAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAA
AATTAACATATATTCAAATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTG
AAGTTATGAGTTGTAATAAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAA
GTTTTAATGAAGGAACAGATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCT
TATCATCGAATCAAAGTGAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAA
CCGATTTAGCAAGAGAGTTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACAC
ATATTTTAAAGAGAGCCATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGC
TAAGACCAGCATTCCCAAAGTTAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTAT
CATGCTCAGTCAATGTGATTTGCGAACTTGCCAGAAGAAATCCAAAGAACTATTTACCA-
---------ATCACGTTTANCAATTTTCACTCATAGTATTTACNTAAATGTACAAGAACG
TGCTTGTCTTATTAATGAATTATTATCATTCTACACAGTCACTAAAGAACAAGGTAATAA
TATTTCAAAGGAGTTAATTTCATTGTTCACAGAACAATTAAATCCAGTTGGTCCAAAAGC
TCAAAAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAATGGATTAATGATCCAAA
ACATCAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTCAATACAAGTACATCTAG
TCATCAAAAGAAACATCACAAACATCACCGTGGAGGATATGATGGTGATGATGATGAAGA
TGATGAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAATTTCAATCGTCATCCAAT
TGATATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCTAATAATCCATATATGTT
GGGTGGTAAAGTATCAAAGAAATTATCAACCAATGATCCTGAAAATATTCCAGTGGTCCA
ACTAACTGGTGATTTAGGTCATCTTCATGTTGGTGCATCATCAAATAGACCAATGCCATC
AAAAGGTAGTAAAAAAACAAAAAAACATTATACCATCGATACTACCACNAAATGCCAGAG
GGGCAAAAGA
Length of connected seq. 1320
Full length Seq ID -
Full length Seq. -
Length of full length seq. -