>VSB187 (VSB187Q) /CSM/VS/VSB1-D/VSB187Q.Seq.d/
XXXXXXXXXXAAAAAAAAAACGATAAAAAAAAAAAGACGATAAAAAAAAAAGGTAAAAAT
AAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAACAGCCAAAGAATTACAACATCGCCAT
TATTCCAAACATTAACNAAATTGATAGGTATTAGTTGAGAAGGTTNTAATTTATCACCGG
AAAGATATTGGGGTGTTTTCTTAATTTTCTATTCAACTTTTACTCAAAAAATAAATAAAA
AATAAAAAAAAGTTTAAATGTTTAAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---kkndkkkktikkkgknkkkkkkkkkf*takelqhrhyskh*xn**vlvekvxiyhrk
digvfs*fsiqlllkk*IKNKKKFKCLKTKKKKKKKKKNKKKKKKKKKKKKKKKKKK

Frame A:
---kkkr*kkkddkkkr*k*kkkkkkkkilnsqrittsplfqtltkligis*egxnlspe
rywgvflifystftqkinkk*kkv*mfkn*kkkkkkkkk*kkkkkkkkkkkkkkkkk


Frame B:
---kkndkkkktikkkgknkkkkkkkkkf*takelqhrhyskh*xn**vlvekvxiyhrk
digvfs*fsiqlllkk*IKNKKKFKCLKTKKKKKKKKKNKKKKKKKKKKKKKKKKKK


Frame C:
---kktikkkrr*kkkvkikkkkkkkknfkqpknyniaiipninxidry*lrrx*fitgk
ilgcflnflfnfysknk*kikkslnv*klkkkkkkkkkikkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB187 (VSB187Q) /CSM/VS/VSB1-D/VSB187Q.Seq.d/                        262   3e-69
VSC538 (VSC538Q) /CSM/VS/VSC5-B/VSC538Q.Seq.d/                        256   2e-67
VSC226 (VSC226Q) /CSM/VS/VSC2-B/VSC226Q.Seq.d/                        256   2e-67
VSI654 (VSI654Q) /CSM/VS/VSI6-C/VSI654Q.Seq.d/                         32   5.3
VSA892 (VSA892Q) /CSM/VS/VSA8-D/VSA892Q.Seq.d/                         32   5.3
VFF374 (VFF374Q) /CSM/VF/VFF3-D/VFF374Q.Seq.d/                         32   5.3
SSM206 (SSM206Q) /CSM/SS/SSM2-A/SSM206Q.Seq.d/                         32   5.3
AFK635 (AFK635Q) /CSM/AF/AFK6-B/AFK635Q.Seq.d/                         32   5.3

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC122977|AC122977.3 Rattus norvegicus clone CH230-333L17, WORKING DRAFT SEQUENCE.    44  1.1  1
AC103221|AC103221.5 Rattus norvegicus clone CH230-49G16, WORKING DRAFT SEQUENCE, 4 unordered pieces.    44  1.1  1
AC116250|AC116250.4 Rattus norvegicus clone CH230-377L5, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  1.1  1
AL929335|AL929335.9 Zebrafish DNA sequence from clone CH211-9D9.    44  1.1  1
CC072429|CC072429.1 CSU-K33r.15L19.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.15L19, DNA sequence.    42  4.5  1
CC872929|CC872929.1 NDL.33K5.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NotreDame Liverpool-33K5, genomic survey sequence.    42  4.5  1
AC126792|AC126792.13 Medicago truncatula clone mth2-8o8, complete sequence.    42  4.5  1
CC138489|CC138489.1 NDL.46M22.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.46M22, DNA sequence.    42  4.5  1
CC090513|CC090513.1 CSU-K33r.11P10.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.11P10, DNA sequence.    42  4.5  1
AC105269|AC105269.2 Homo sapiens chromosome 1 clone RP4-788P17, complete sequence.    44     15  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 183,022,409

 psg: 0.13  gvh: -0.31  alm: 0.91  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 2.97  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VSB187 is nuc

>VSB187Z.Seq
----------AAAAAAAAAACGATAAAAAAAAAAAGACGATAAAAAAAAAAGGTAAAAAT
AAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAACAGCCAAAGAATTACAACATCGCCAT
TATTCCAAACATTAACNAAATTGATAGGTATTAGTTGAGAAGGTTNTAATTTATCACCGG
AAAGATATTGGGGTGTTTTCTTAATTTTCTATTCAACTTTTACTCAAAAAATAAATAAAA
AATAAAAAAAAGTTTAAATGTTTAAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA