>VSB166 (VSB166Q) /CSM/VS/VSB1-C/VSB166Q.Seq.d/
CATAAATAATGTCAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTC
CAGTTGGTGCTGTCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTG
CCGTCAAAGGTATCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGG
TCATGGCTACCGTCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAG
TTGTCAGACAAAGAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATA
ACGCTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCG
CCAAGGAATGCTCCGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAA
TAAATACACATAAAGTTAAAACAATATAAAAAAAAAAAAAA

*IMSKAQAVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGDMV
MATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGNILGPVA
KECSDLWPKVATNAGTIV*inthkvkti*kkkk

Frame A:
hk*cqkhkpsvvtteyhsvfqlvls*tvliilvpkiytslpskvskvv*idyhpqvlviw
swlpskrvnqn*erkfalv*lsdkentgrermvftsiskitlvlcviqkvkskvtfsdqs
prnapiygqrlppmpvplfk*ihiklkqykkkk


Frame B:
innvkstsrr**lqsitrssswccheqc**fwcqkfirhcrqryqrsfk*itirrcw*yg
hgyrqkg*trikkeslhwfscqtkktleekgwclhlfrr*rwcyv*skr*sqr*hsrtsr
qgmlrfmakgchqcryhclnkyt*s*nnikkkk


Frame C:
*IMSKAQAVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGDMV
MATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGNILGPVA
KECSDLWPKVATNAGTIV*inthkvkti*kkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK191 (VSK191Q) /CSM/VS/VSK1-D/VSK191Q.Seq.d/                        886   0.0
VSJ725 (VSJ725Q) /CSM/VS/VSJ7-B/VSJ725Q.Seq.d/                        886   0.0
VSJ286 (VSJ286Q) /CSM/VS/VSJ2-D/VSJ286Q.Seq.d/                        886   0.0
VSJ195 (VSJ195Q) /CSM/VS/VSJ1-D/VSJ195Q.Seq.d/                        886   0.0
VSJ186 (VSJ186Q) /CSM/VS/VSJ1-D/VSJ186Q.Seq.d/                        886   0.0
VSI870 (VSI870Q) /CSM/VS/VSI8-C/VSI870Q.Seq.d/                        886   0.0
VSI106 (VSI106Q) /CSM/VS/VSI1-A/VSI106Q.Seq.d/                        886   0.0
VSH682 (VSH682Q) /CSM/VS/VSH6-D/VSH682Q.Seq.d/                        886   0.0
VSF856 (VSF856Q) /CSM/VS/VSF8-C/VSF856Q.Seq.d/                        886   0.0
VSF787 (VSF787Q) /CSM/VS/VSF7-D/VSF787Q.Seq.d/                        886   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG661762|BG661762.1 kx06a08.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RL23_CAEEL P48158 PROBABLE 60S RIBOSOMAL PROTEIN L23. [1] ;, mRNA sequence.    64   4e-33  5
BG301543|BG301543.1 kt02d05.y1 Strongyloides ratti L1 SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL23_CAEEL P48158 PROBABLE 60S RIBOSOMAL PROTEIN L23. [1] ;, mRNA sequence.    66   3e-22  4
BG301842|BG301842.1 kt06b05.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL23_CAEEL P48158 PROBABLE 60S RIBOSOMAL PROTEIN L23. [1] ;, mRNA sequence.    66   3e-22  4
BG301372|BG301372.1 kt04f05.y1 Strongyloides ratti L1 SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL23_CAEEL P48158 PROBABLE 60S RIBOSOMAL PROTEIN L23. [1] ;, mRNA sequence.    66   1e-21  4
BG661420|BG661420.1 kx01f05.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RL23_CAEEL P48158 PROBABLE 60S RIBOSOMAL PROTEIN L23. [1] ;, mRNA sequence.    50   8e-20  4
CD830382|CD830382.1 BN40.045E20F011229 BN40 Brassica napus cDNA clone BN40045E20, mRNA sequence.    62   2e-17  5
CD822890|CD822890.1 BN25.046P08F020109 BN25 Brassica napus cDNA clone BN25046P08, mRNA sequence.    62   2e-17  5
CD812310|CD812310.1 BN10.020L21F020208 BN10 Brassica napus cDNA clone BN10020L21, mRNA sequence.    62   2e-17  5
CD819448|CD819448.1 BN20.049A01F011220 BN20 Brassica napus cDNA clone BN20049A01, mRNA sequence.    62   3e-17  5
AV536650|AV536650.1 Arabidopsis thaliana cDNA clone:pAZNII0387R, 5' end.    52   8e-17  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6PC14) RecName: Full=60S ribosomal protein L23;  &AY684289_1(A...   206   2e-52
AK012694_1(AK012694|pid:none) Mus musculus 10, 11 days embryo wh...   206   3e-52
BC102556_1(BC102556|pid:none) Bos taurus ribosomal protein L23, ...   205   4e-52
BT058333_1(BT058333|pid:none) Salmo salar clone Contig3997 60S r...   205   5e-52
BT073700_1(BT073700|pid:none) Oncorhynchus mykiss clone omyk-evo...   205   5e-52
EU042114_1(EU042114|pid:none) Epinephelus coioides ribosomal pro...   205   5e-52
BC003518_1(BC003518|pid:none) Homo sapiens, Similar to ribosomal...   205   5e-52
BC073541_1(BC073541|pid:none) Xenopus laevis MGC82808 protein, m...   203   1e-51
CP000498_170(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...   203   1e-51
(Q5REU2) RecName: Full=60S ribosomal protein L23;  &CR857424_1(C...   203   1e-51

 psg: 0.73  gvh: 0.37  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.09
 nuc: 0.17  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VSB166 is nuc

>VSB166E.Seq
CATAAATAATGTCAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTC
CAGTTGGTGCTGTCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTG
CCGTCAAAGGTATCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGG
TCATGGCTACCGTCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAG
TTGTCAGACAAAGAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATA
ACGCTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCG
CCAAGGAATGCTCCGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAA
TAAATACACATAAAGTTAAAACAATATAAAAAAAAAAAAAA