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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB165
Library VS
(Link to library)
Clone ID VSB165
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16488-1
Original site URL
Representative seq. ID VSB165E
(Link to Original site)
Representative DNA sequence 
>VSB165 (VSB165Q) /CSM/VS/VSB1-C/VSB165Q.Seq.d/
GGCTAAAGAACGTGGTGATTTATTATTTCCAAGCATCGAATCCGAAAAACGTAAACATAA
ATTAAAGAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTTG
TAGAACCATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATTTGCAGTTCATGTTC
AACTGTTATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAAG
ACAAAAATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTTTTTAAT
AGAAAATAAACAATAAAAAAAAAATGCTATGTGCAGAGTAATAATATAAT
sequence update 2000. 3.29
Translated Amino Acid sequence 
AKERGDLLFPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSSCS
TVIAQPTGGRARITAGCRLRQKSD*gyrpiaptlsifflienkq*kknamcrvii*
Translated Amino Acid sequence (All Frames) 
Frame A:
g*rtw*fiiskhrirkt*t*ikeigpstklllygyqlsrl*nhhyrfltrpkrchlqfmf
ncycstnwwsc*nhcrlsfktkirlrlpsnrtnafnfffnrk*tikkkcyvqsnni


Frame B:
AKERGDLLFPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSSCS
TVIAQPTGGRARITAGCRLRQKSD*gyrpiaptlsifflienkq*kknamcrvii*


Frame C:
lknvviyyfqasnpknvnin*rdwskhqtpslwistvtvvepslpfshtpktlsfavhvq
llllnqlvvvleslpvvv*dknptkvtvqshqrfqfff**kinnkkkmlcae**yn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB165 (VSB165Q) /CSM/VS/VSB1-C/VSB165Q.Seq.d/                        575   e-163
VSJ645 (VSJ645Q) /CSM/VS/VSJ6-B/VSJ645Q.Seq.d/                        561   e-159
VSJ164 (VSJ164Q) /CSM/VS/VSJ1-C/VSJ164Q.Seq.d/                        561   e-159
VSI793 (VSI793Q) /CSM/VS/VSI7-D/VSI793Q.Seq.d/                        561   e-159
VSI587 (VSI587Q) /CSM/VS/VSI5-D/VSI587Q.Seq.d/                        561   e-159
VSI480 (VSI480Q) /CSM/VS/VSI4-D/VSI480Q.Seq.d/                        561   e-159
VSI460 (VSI460Q) /CSM/VS/VSI4-C/VSI460Q.Seq.d/                        561   e-159
VSH184 (VSH184Q) /CSM/VS/VSH1-D/VSH184Q.Seq.d/                        561   e-159
VSG840 (VSG840Q) /CSM/VS/VSG8-B/VSG840Q.Seq.d/                        561   e-159
VSG805 (VSG805Q) /CSM/VS/VSG8-A/VSG805Q.Seq.d/                        561   e-159
own update 2002. 8.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   287   e-156  4
CF423215|CF423215.1 NcEST3d69b03.y1 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9U5N5 Q9U5N5 40S RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    40   3e-04  2
CF599090|CF599090.1 NcEST3d98e07.y1 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.016  2
CA857264|CA857264.1 NcEST3a47c04.y1 Nc-1 pZ Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.016  2
CF423272|CF423272.1 NcEST3d69h07.y1 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.016  2
CF260143|CF260143.1 NcEST3c94e11.y2 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.016  2
CF421933|CF421933.1 NcEST3d70c04.y1 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.016  2
CF273832|CF273832.1 NcEST3d28g08.y1 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.016  2
CA857068|CA857068.1 NcEST3a43g09.y1 Nc-1 pZ Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.016  2
CF940179|CF940179.1 NcESTqab31e07.y1 Nc-1 Tachyzoite cDNA Library 2 Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.016  2
dna update 2004. 1.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF082617_1(EF082617|pid:none) Picea sitchensis clone WS0299_E22 ...   124   8e-28
AY857484_1(AY857484|pid:none) Suberites domuncula S27 mRNA, comp...   123   2e-27
BT051468_1(BT051468|pid:none) Medicago truncatula clone MTYF1_F2...   122   3e-27
DQ241850_1(DQ241850|pid:none) Solanum tuberosum clone 187G01 rib...   121   7e-27
BT053528_1(BT053528|pid:none) Medicago truncatula clone MTYFP_FQ...   121   7e-27
EF146224_1(EF146224|pid:none) Populus trichocarpa clone WS0116_F...   121   9e-27
DQ673404_1(DQ673404|pid:none) Diaphorina citri putative ribosoma...   120   1e-26
EF179453_1(EF179453|pid:none) Xenopsylla cheopis clone XC-86 rib...   120   1e-26
(Q9M2F1) RecName: Full=40S ribosomal protein S27-2;  &AF083336_1...   120   2e-26
AL137898_1(AL137898|pid:none) Arabidopsis thaliana DNA chromosom...   120   2e-26
protein update 2009. 7.28
PSORT 

 psg: 0.81  gvh: 0.47  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.05  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VSB165 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSB165E
Full length Seq. 
>VSB165E.Seq
GGCTAAAGAACGTGGTGATTTATTATTTCCAAGCATCGAATCCGAAAAACGTAAACATAA
ATTAAAGAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTTG
TAGAACCATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATTTGCAGTTCATGTTC
AACTGTTATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAAG
ACAAAAATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTTTTTAAT
AGAAAATAAACAATAAAAAAAAAATGCTATGTGCAGAGTAATAATATAAT
Length of full length seq. 350