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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB156
Library VS
(Link to library)
Clone ID VSB156
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U02244-1
Original site URL
Representative seq. ID VSB156E
(Link to Original site)
Representative DNA sequence 
>VSB156 (VSB156Q) /CSM/VS/VSB1-C/VSB156Q.Seq.d/
CTAGTTCTAGATCGCGAGCGGCGCCCTTTTTTTTTTTTTTTTATTTATTTATTTTATAAT
TTAATGATTGGAATTTCAACTAACTCGATTAGAGATAGTTTGCTAACCACCTGAAACCTT
CAGCATAACCGTATCTCTTTACAACACCTCGCACATAAATAAAAAAACTAAAAAAACTTA
AAAACTAAAAAACTAAAAAACTAAAAAACT
sequence update 2000. 3.29
Translated Amino Acid sequence 
LVLDRERRPFFFFFIYLFYNLMIGISTNSIRDSLLTT*nlqhnrislqhlahk*kn*knl
ktkklkn*kt
Translated Amino Acid sequence (All Frames) 
Frame A:
LVLDRERRPFFFFFIYLFYNLMIGISTNSIRDSLLTT*nlqhnrislqhlahk*kn*knl
ktkklkn*kt


Frame B:
*f*iasgalfffflfiyfii**lefqltrleivc*ppetfsitvslyntshinkktkkt*
klkn*ktkk


Frame C:
ssrsraapfffffylfil*fndwnfn*ld*r*fanhlkpsa*pylfttprt*ikklkklk
n*ktkklkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB156 (VSB156Q) /CSM/VS/VSB1-C/VSB156Q.Seq.d/                        224   4e-58
VSE442 (VSE442Q) /CSM/VS/VSE4-B/VSE442Q.Seq.d/                        208   2e-53
SSM883 (SSM883Q) /CSM/SS/SSM8-D/SSM883Q.Seq.d/                        208   2e-53
SLJ890 (SLJ890Q) /CSM/SL/SLJ8-D/SLJ890Q.Seq.d/                        208   2e-53
FC-AC17 (FC-AC17Q) /CSM/FC/FC-AC/FC-AC17Q.Seq.d/                      208   2e-53
FC-068 (FC-068Q) /CSM/CG/CG-FC/FC-068Q.Seq.d/                         208   2e-53
FC-BH17 (FC-BH17Q) /CSM/FC/FC-BH/FC-BH17Q.Seq.d/                      161   5e-39
VSI521 (VSI521Q) /CSM/VS/VSI5-A/VSI521Q.Seq.d/                         52   3e-06
VSF270 (VSF270Q) /CSM/VS/VSF2-C/VSF270Q.Seq.d/                         52   3e-06
SLK369 (SLK369Q) /CSM/SL/SLK3-C/SLK369Q.Seq.d/                         52   3e-06
own update 2001.11.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   208   2e-50  1
BQ230675|BQ230675.1 AGENCOURT_7552077 NIH_MGC_70 Homo sapiens cDNA clone IMAGE:6061036 5', mRNA sequence.    50   2e-09  2
BG025310|BG025310.1 602276204F1 NIH_MGC_85 Homo sapiens cDNA clone IMAGE:4364185 5', mRNA sequence.    48   1e-08  2
CD722013|CD722013.1 oj04d05.y1 Human lacrimal gland, unamplified: oj Homo sapiens cDNA clone oj04d05 5', mRNA sequence.    44   2e-08  2
BQ602031|BQ602031.1 MI-P-HO-ahu-a-01-1-UM.s1 MI-P-HO Sus scrofa cDNA clone MI-P-HO-ahu-a-01-1-UM 3', mRNA sequence.    44   6e-08  2
BF702930|BF702930.1 MI-P-H2-abi-g-05-1-UM.s1 MI-P-H2 Sus scrofa cDNA clone MI-P-H2-abi-g-05-1-UM 3', mRNA sequence.    44   8e-08  2
CK626583|CK626583.1 mj23g01.y1 Mouse RPE/choroid, unamplified: mi/mj Mus musculus cDNA clone mj23g01 5', mRNA sequence.    44   8e-08  2
BP520537|BP520537.1 Hydra magnipapillata cDNA, clone:hmp_17947.    44   9e-08  2
BG925602|BG925602.1 HNC13-1-F1.R HNC (Human Normal Cartilage) Homo sapiens cDNA, mRNA sequence.    44   1e-07  2
AL024011|AL024011.1 Mus musculus cDNA clone 528-5O21 5'; expressed sequence tag; k8224b31 Beddington mouse dissected endoderm, 7.5 dpc.    44   1e-07  2
dna update 2004. 2.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_49(AC116963|pid:none) Dictyostelium discoideum chromoso...    45   0.001
AY737548_1(AY737548|pid:none) Toxoptera citricida putative sar1 ...    37   0.22
AM502223_3(AM502223|pid:none) Leishmania infantum chromosome 5.        37   0.28
CT005244_3(CT005244|pid:none) Leishmania major strain Friedlin, ...    37   0.28
AF424657_1(AF424657|pid:none) Phytophthora infestans clone MY-08...    36   0.48
BT076997_1(BT076997|pid:none) Caligus rogercresseyi clone crog-e...    35   0.63
DQ440264_1(DQ440264|pid:none) Aedes aegypti clone AET-3283 vesic...    35   0.63
AE014297_3248(AE014297|pid:none) Drosophila melanogaster chromos...    35   0.63
BT078190_1(BT078190|pid:none) Lepeophtheirus salmonis Pacific fo...    35   0.63
AJ276483_1(AJ276483|pid:none) Drosophila melanogaster putative s...    35   0.63
protein update 2009. 7.28
PSORT 

 psg: 1.00  gvh: 0.50  alm: 0.30  top: 0.40  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 20.0 %: nuclear
	 12.0 %: cytoplasmic
	 12.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for VSB156 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSB156E
Full length Seq. 
>VSB156E.Seq
CTAGTTCTAGATCGCGAGCGGCGCCCTTTTTTTTTTTTTTTTATTTATTTATTTTATAAT
TTAATGATTGGAATTTCAACTAACTCGATTAGAGATAGTTTGCTAACCACCTGAAACCTT
CAGCATAACCGTATCTCTTTACAACACCTCGCACATAAATAAAAAAACTAAAAAAACTTA
AAAACTAAAAAACTAAAAAACTAAAAAACT
Length of full length seq. 210