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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB148
Library VS
(Link to library)
Clone ID VSB148
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16494-1
Original site URL
Representative seq. ID VSB148E
(Link to Original site)
Representative DNA sequence 
>VSB148 (VSB148Q) /CSM/VS/VSB1-B/VSB148Q.Seq.d/
TCCAAAATGCCATCCAATAAAACATTAAAAATTAAAAAGATTTTAGGCAAAAAGCAAAAG
CAAAACAGACCAGTCCCACAATGGATTCGTTTAAGAACTGATAACACCATCAGATACAAT
AACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTAAACGCCTCAGTGCAAGCTT
ATTGGAACATATCGATCATTATATATTTTAATAAAATTGATCTTTTGGACGTTTAACAAA
GAATTTTAAA
sequence update 2000. 4. 6
Translated Amino Acid sequence 
SKMPSNKTLKIKKILGKKQKQNRPVPQWIRLRTDNTIRYNNKRRHWRRTKLGI*tpqckl
igtyrslyiliklifwtfnkef*
Translated Amino Acid sequence (All Frames) 
Frame A:
SKMPSNKTLKIKKILGKKQKQNRPVPQWIRLRTDNTIRYNNKRRHWRRTKLGI*tpqckl
igtyrslyiliklifwtfnkef*


Frame B:
pkchpikh*klkrf*aksksktdqshngfv*elitpsdtitnvdigdvqslvskrlsasl
lehidhyif**n*sfgrltknfk


Frame C:
qnaiq*nikn*kdfrqkakakqtsptmdsfkn**hhqiq*qt*tletykawylnasvqay
wnisiiiyfnkidlldv*qril
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK412 (VSK412Q) /CSM/VS/VSK4-A/VSK412Q.Seq.d/                        369   e-101
VSJ763 (VSJ763Q) /CSM/VS/VSJ7-C/VSJ763Q.Seq.d/                        369   e-101
VSI566 (VSI566Q) /CSM/VS/VSI5-C/VSI566Q.Seq.d/                        369   e-101
VSC563 (VSC563Q) /CSM/VS/VSC5-C/VSC563Q.Seq.d/                        369   e-101
VSB148 (VSB148Q) /CSM/VS/VSB1-B/VSB148Q.Seq.d/                        369   e-101
VSJ185 (VSJ185Q) /CSM/VS/VSJ1-D/VSJ185Q.Seq.d/                        355   2e-97
VSI602 (VSI602Q) /CSM/VS/VSI6-A/VSI602Q.Seq.d/                        355   2e-97
VSG730 (VSG730Q) /CSM/VS/VSG7-B/VSG730Q.Seq.d/                        355   2e-97
VSG307 (VSG307Q) /CSM/VS/VSG3-A/VSG307Q.Seq.d/                        355   2e-97
VHA639 (VHA639Q) /CSM/VH/VHA6-B/VHA639Q.Seq.d/                        355   2e-97
own update 2003. 1. 8
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL115377|AL115377.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54   0.001  1
AL114313|AL114313.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54   0.001  1
AL115802|AL115802.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54   0.001  1
AL115145|AL115145.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54   0.001  1
AL113959|AL113959.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54   0.001  1
AL111340|AL111340.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54   0.001  1
AL110967|AL110967.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54   0.001  1
AL114405|AL114405.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54   0.001  1
AL117142|AL117142.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54   0.001  1
AL114232|AL114232.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54   0.001  1
dna update 2004. 2.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY961478_1(AY961478|pid:none) Phytophthora infestans clone MY-09...    70   3e-11
FM992688_598(FM992688|pid:none) Candida dubliniensis CD36 chromo...    68   9e-11
(Q96W55) RecName: Full=60S ribosomal protein L39; AltName: Full=...    68   9e-11
FJ362595_1(FJ362595|pid:none) Vernicia fordii 60S ribosomal prot...    67   2e-10
AP003019_37(AP003019|pid:none) Oryza sativa Japonica Group genom...    67   2e-10
(P51425) RecName: Full=60S ribosomal protein L39;  &(P51426) Rec...    67   2e-10
CP000583_325(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...    66   3e-10
EU952793_1(EU952793|pid:none) Zea mays clone 1289591 60S ribosom...    66   3e-10
CU633900_605(CU633900|pid:none) Podospora anserina genomic DNA c...    66   4e-10
(Q8L8W6) RecName: Full=60S ribosomal protein L39-2;  &AK118748_1...    66   4e-10
protein update 2009. 7.28
PSORT 

 psg: 0.49  gvh: 0.07  alm: 0.72  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.00
 nuc: 0.27  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VSB148 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSB148E
Full length Seq. 
>VSB148E.Seq
TCCAAAATGCCATCCAATAAAACATTAAAAATTAAAAAGATTTTAGGCAAAAAGCAAAAG
CAAAACAGACCAGTCCCACAATGGATTCGTTTAAGAACTGATAACACCATCAGATACAAT
AACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTAAACGCCTCAGTGCAAGCTT
ATTGGAACATATCGATCATTATATATTTTAATAAAATTGATCTTTTGGACGTTTAACAAA
GAATTTTAAA
Length of full length seq. 250