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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB141
Library VS
(Link to library)
Clone ID VSB141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05251-1
Original site URL
Representative seq. ID VSB141E
(Link to Original site)
Representative DNA sequence 
>VSB141 (VSB141Q) /CSM/VS/VSB1-B/VSB141Q.Seq.d/
CAGAAACTAATAAATTAAAAGTTAATATTGAAGAGCAATTAAATAGATTATTAGCACAAT
TACAAGATATTGAAGAATTAAAAGAAGATATCACACAAGAAAAAAAAAAATAAAAAAGAA
AAGAAAAGAAAAATAAAAAAATTAAAAAATAAAAAAATAAATAAACAAATAAATATTTAA
AATGAAAATTACAATTAGATCCTTATTAGGCCATTCATTTGAATTGGAAGTAAATCCATC
AGATACTACTGAAGATATCAAAAGAAAAATTGAAAAGCATACAGATACTCCATTTGGTAA
GAATTTCA
sequence update 2000. 4. 6
Translated Amino Acid sequence 
rn**iks*y*raik*iistitry*rikrryhtrkkkikkkrkek*kn*kikk*ink*IFK
MKITIRSLLGHSFELEVNPSDTTEDIKRKIEKHTDTPFGKNF
Translated Amino Acid sequence (All Frames) 
Frame A:
qklin*klilksn*idy*hnykilkn*kkishkkkknkkekkrkikklknkkinkqini*
nenyn*ilirpfi*igsksiryy*ryqkkn*kayrysiw*ef


Frame B:
rn**iks*y*raik*iistitry*rikrryhtrkkkikkkrkek*kn*kikk*ink*IFK
MKITIRSLLGHSFELEVNPSDTTEDIKRKIEKHTDTPFGKNF


Frame C:
etnklkvnieeqlnrllaqlqdieelkeditqekkk*krkekknkkikk*knk*tnkylk
*klqldpy*aihlnwk*ihqillkiskeklksiqilhlvris
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB141 (VSB141Q) /CSM/VS/VSB1-B/VSB141Q.Seq.d/                        238   4e-62
VSF216 (VSF216Q) /CSM/VS/VSF2-A/VSF216Q.Seq.d/                        196   1e-49
SSG521 (SSG521Q) /CSM/SS/SSG5-A/SSG521Q.Seq.d/                        196   1e-49
CFF744 (CFF744Q) /CSM/CF/CFF7-B/CFF744Q.Seq.d/                         40   0.019
AFG829 (AFG829Q) /CSM/AF/AFG8-B/AFG829Q.Seq.d/                         40   0.019
AFD275 (AFD275Q) /CSM/AF/AFD2-D/AFD275Q.Seq.d/                         40   0.019
VSK202 (VSK202Q) /CSM/VS/VSK2-A/VSK202Q.Seq.d/                         38   0.075
VSI111 (VSI111Q) /CSM/VS/VSI1-A/VSI111Q.Seq.d/                         38   0.075
VHL131 (VHL131Q) /CSM/VH/VHL1-B/VHL131Q.Seq.d/                         38   0.075
VHG292 (VHG292Q) /CSM/VH/VHG2-D/VHG292Q.Seq.d/                         38   0.075
own update 2003. 1. 8
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.   238   4e-59  1
AF198100|AF198100.1 Fowlpox virus, complete genome.                34   0.006  7
BX842645|BX842645.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 4/4.    36   0.007  8
AC120724|AC120724.4 Rattus norvegicus clone CH230-291H6, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36   0.014  4
AC010614|AC010614.8 Homo sapiens chromosome 19 clone CTD-2518G19, complete sequence.    46   0.021  3
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    36   0.022  8
AJ581527|AJ581527.1 Fowlpox virus (isolate HP-438[Munich]), passage 438 clone FP9,  complete genome.    34   0.037  7
BX572090|BX572090.1 Prochlorococcus marinus MED4 complete genome; segment 1/5.    36   0.039  8
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    32   0.052  11
AE015944|AE015944.1 Clostridium tetani E88, section 9 of 10 of the complete genome.    42   0.071  4
dna update 2004. 2.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116960_59(AC116960|pid:none) Dictyostelium discoideum chromoso...    71   1e-11
(Q54ID4) RecName: Full=Protein LZIC; AltName: Full=Leucine zippe...    66   4e-10
BT079000_1(BT079000|pid:none) Esox lucius clone eluc-evq-514-298...    47   2e-04
DQ058007_1(DQ058007|pid:none) Danio rerio leucine zipper and ICA...    47   3e-04
(Q6DHH7) RecName: Full=Protein LZIC; AltName: Full=Leucine zippe...    47   3e-04
BT046259_1(BT046259|pid:none) Salmo salar clone ssal-eve-569-130...    46   4e-04
(Q5ZKW2) RecName: Full=Protein LZIC; AltName: Full=Leucine zippe...    44   0.001
AK304348_1(AK304348|pid:none) Homo sapiens cDNA FLJ55829 complet...    44   0.001
BC103024_1(BC103024|pid:none) Bos taurus leucine zipper and CTNN...    44   0.001
BC151733_1(BC151733|pid:none) Bos taurus leucine zipper and CTNN...    44   0.001
protein update 2009. 7.28
PSORT 

 psg: 0.76  gvh: 0.47  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSB141 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSB141E
Full length Seq. 
>VSB141E.Seq
CAGAAACTAATAAATTAAAAGTTAATATTGAAGAGCAATTAAATAGATTATTAGCACAAT
TACAAGATATTGAAGAATTAAAAGAAGATATCACACAAGAAAAAAAAAAATAAAAAAGAA
AAGAAAAGAAAAATAAAAAAATTAAAAAATAAAAAAATAAATAAACAAATAAATATTTAA
AATGAAAATTACAATTAGATCCTTATTAGGCCATTCATTTGAATTGGAAGTAAATCCATC
AGATACTACTGAAGATATCAAAAGAAAAATTGAAAAGCATACAGATACTCCATTTGGTAA
GAATTTCA
Length of full length seq. 308