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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB133
Library VS
(Link to library)
Clone ID VSB133
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12922-1
Original site URL
Representative seq. ID VSB133Z
(Link to Original site)
Representative DNA sequence 
>VSB133 (VSB133Q) /CSM/VS/VSB1-B/VSB133Q.Seq.d/
XXXXXXXXXXGCATCCTTGAAATTAACTTTATTAAATCCAAAAGGAAGAATATGGGCAAT
GGTTGCCGGAGGTGGTGCCTCTGTAATCTATGCTGACACTGTTGCTGATTTAGGTTTTGG
TAATGAGCTTGGAAATTATGGTGAATATTCCGGTGATCCAAATGAAGAGGATACTCATAA
ATATGCATGCACTTTAATTTCATTGGCAACCAGAAATCCTGATTCTAGACCAAGAGCATT
ATTAATTGGTGGTGGTATTGCTAATTTTACTGATGTGGCTGCCACTTTCAAAGGTATCAT
TAGAGCAATTAAAGAGTATCATGATGATATCATTAAATCAAATCTTTCCATTTTCGTTAG
AAGAGGTGGTCCAAATTATCAATCGGGTTTACAACATATGAGAGAAATTGGTCATAAATT
ACATATCCCAATCAAAGTTTTCGGTCCTGAAGTTAATATGACAAGTATTGTTGCAATGGC
AATCCAACATATTAATGTACCTATTGTTAATCCTTTAAAACCACAAACAAATAATTTTTC
ACCAACTTTAAATGGTGTTCATTAAAAATTTTAAAAAAAAAAAAGAAATAAAAA
sequence update 2000. 4. 6
Translated Amino Acid sequence 
---SLKLTLLNPKGRIWAMVAGGGASVIYADTVADLGFGNELGNYGEYSGDPNEEDTHKY
ACTLISLATRNPDSRPRALLIGGGIANFTDVAATFKGIIRAIKEYHDDIIKSNLSIFVRR
GGPNYQSGLQHMREIGHKLHIPIKVFGPEVNMTSIVAMAIQHINVPIVNPLKPQTNNFSP
TLNGVH*kf*kkkrnk
Translated Amino Acid sequence (All Frames) 
Frame A:
---hp*n*ly*iqkeeygqwlpevvpl*smltllli*vlvmsleimvnipviqmkrilin
mhal*fhwqpeilildqehy*lvvvllillmwlplskvsleqlksimmislnqifpfsle
evvqiinrvyni*eklvinyisqskfsvlkli*qvllqwqsnilmylllil*nhkqiifh
ql*mvfiknfkkkkeik


Frame B:
---ileinfikskrknmgngcrrwclcnlc*hcc*frfw**awklw*ifr*sk*rgys*i
cmhfnfignqks*f*tksiinwwwyc*fy*cgchfqryh*sn*rvs**yh*iksfhfr*k
rwsklsigfttyernws*itypnqsfrs*s*ydkyccngnpty*ctyc*sfkttnk*fft
nfkwcslkilkkkkk*k


Frame C:
---SLKLTLLNPKGRIWAMVAGGGASVIYADTVADLGFGNELGNYGEYSGDPNEEDTHKY
ACTLISLATRNPDSRPRALLIGGGIANFTDVAATFKGIIRAIKEYHDDIIKSNLSIFVRR
GGPNYQSGLQHMREIGHKLHIPIKVFGPEVNMTSIVAMAIQHINVPIVNPLKPQTNNFSP
TLNGVH*kf*kkkrnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB133 (VSB133Q) /CSM/VS/VSB1-B/VSB133Q.Seq.d/                       1114   0.0
VSB813 (VSB813Q) /CSM/VS/VSB8-A/VSB813Q.Seq.d/                       1106   0.0
SSC786 (SSC786Q) /CSM/SS/SSC7-D/SSC786Q.Seq.d/                       1106   0.0
VFF648 (VFF648Q) /CSM/VF/VFF6-B/VFF648Q.Seq.d/                       1098   0.0
VFF576 (VFF576Q) /CSM/VF/VFF5-D/VFF576Q.Seq.d/                       1092   0.0
CFF880 (CFF880Q) /CSM/CF/CFF8-D/CFF880Q.Seq.d/                       1092   0.0
VFF631 (VFF631Q) /CSM/VF/VFF6-B/VFF631Q.Seq.d/                       1076   0.0
AFM446 (AFM446Q) /CSM/AF/AFM4-B/AFM446Q.Seq.d/                       1076   0.0
SLC828 (SLC828Q) /CSM/SL/SLC8-B/SLC828Q.Seq.d/                       1051   0.0
AFA176 (AFA176Q) /CSM/AF/AFA1-D/AFA176Q.Seq.d/                       1015   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM108865|BM108865.1 EST556401 potato roots Solanum tuberosum cDNA clone cPRO2F7 5' end, mRNA sequence.    52  2e-14  4
BQ512190|BQ512190.1 EST619605 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHW74 5' end, mRNA sequence.    52  2e-14  4
CA932300|CA932300.1 MTU5CS.P11.B11 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA sequence.    60  5e-13  3
BQ512191|BQ512191.1 EST619606 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHW74 3' end, mRNA sequence.    52  6e-12  3
AW156815|AW156815.1 se31b11.y1 Gm-c1015 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1015-2806 5' similar to TR:O80526 O80526 F19J9.9 PROTEIN. ;, mRNA sequence.    64  6e-10  2
BE451022|BE451022.1 EST401909 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY16M5, mRNA sequence.    44  8e-10  3
BG441140|BG441140.1 GA__Ea0011O01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0011O01f, mRNA sequence.    46  1e-07  3
BG131940|BG131940.1 EST464832 tomato crown gall Lycopersicon esculentum cDNA clone cTOE5D20 5' sequence, mRNA sequence.    44  5e-07  2
CA801502|CA801502.1 sau06f07.y2 Gm-c1062 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1062-7550 5' similar to TR:O80526 O80526 F19J9.9 PROTEIN. ;, mRNA sequence.    44  8e-07  3
BI969259|BI969259.1 GM830007B20C12 Gm-r1083 Glycine max cDNA clone Gm-r1083-2448 3', mRNA sequence.    54  8e-07  2
dna update 2003. 8.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT070808_1(BT070808|pid:none) Picea sitchensis clone WS02750_O19...   218   1e-55
AJ344108_1(AJ344108|pid:none) Lupinus albus mRNA for ATP citrate...   216   5e-55
AC003970_9(AC003970|pid:none) Arabidopsis thaliana chromosome I ...   215   6e-55
AB036847_1(AB036847|pid:none) Ciona intestinalis Ci-ACL mRNA for...   215   8e-55
(Q91V92) RecName: Full=ATP-citrate synthase;          EC=2.3.3.8...   213   2e-54
AK162364_1(AK162364|pid:none) Mus musculus adult male epididymis...   213   2e-54
AC002292_32(AC002292|pid:none) Arabidopsis thaliana BAC F8A5, co...   213   3e-54
AJ851548_1(AJ851548|pid:none) Gallus gallus mRNA for hypothetica...   213   3e-54
BC100618_1(BC100618|pid:none) Rattus norvegicus ATP citrate lyas...   213   4e-54
(P53396) RecName: Full=ATP-citrate synthase;          EC=2.3.3.8...   213   4e-54
protein update 2009. 7.28
PSORT 

 psg: 0.78  gvh: 0.48  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSB133 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSB133Z
3' end seq. 
>VSB133Z.Seq
----------GCATCCTTGAAATTAACTTTATTAAATCCAAAAGGAAGAATATGGGCAAT
GGTTGCCGGAGGTGGTGCCTCTGTAATCTATGCTGACACTGTTGCTGATTTAGGTTTTGG
TAATGAGCTTGGAAATTATGGTGAATATTCCGGTGATCCAAATGAAGAGGATACTCATAA
ATATGCATGCACTTTAATTTCATTGGCAACCAGAAATCCTGATTCTAGACCAAGAGCATT
ATTAATTGGTGGTGGTATTGCTAATTTTACTGATGTGGCTGCCACTTTCAAAGGTATCAT
TAGAGCAATTAAAGAGTATCATGATGATATCATTAAATCAAATCTTTCCATTTTCGTTAG
AAGAGGTGGTCCAAATTATCAATCGGGTTTACAACATATGAGAGAAATTGGTCATAAATT
ACATATCCCAATCAAAGTTTTCGGTCCTGAAGTTAATATGACAAGTATTGTTGCAATGGC
AATCCAACATATTAATGTACCTATTGTTAATCCTTTAAAACCACAAACAAATAATTTTTC
ACCAACTTTAAATGGTGTTCATTAAAAATTTTAAAAAAAAAAAAGAAATAAAAA
Length of 3' end seq. 584
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -