>VSB121 (VSB121Q) /CSM/VS/VSB1-A/VSB121Q.Seq.d/
XXXXXXXXXXAATAATAATAATAGTATTAAATGTTCATTATTAATATAAAATTCAAATCA
TATAAACACATTATAATTTAACACAATGCCTTTACAAATTTTTAATAAGCAAGGTGGTAA
TAATCAATACACAGTTNAATTATCAATTGATTTAATTTCANATGTATCCTATGCATATCC
CGAAGATACAGAATTTGAAATTGAATGGAAACGTGGTGTACATAGAGGTGTTTTACCANA
TGTGTATATGCAGAGCGATGGCGATATTAAACCATCAACTCAGTTTTTAATACCATGTCA
ATTTTTAAAACACAAATCAGATCAAGGTGGTGAAGAATTTGCTCCAAAAAGTTTAATTGT
TAATTTAAGAAAAGTAAATAT

---nnnsikcslli*nsnhintl*FNTMPLQIFNKQGGNNQYTVXLSIDLISXVSYAYPE
DTEFEIEWKRGVHRGVLPXVYMQSDGDIKPSTQFLIPCQFLKHKSDQGGEEFAPKSLIVN
LRKVN

Frame A:
---iiiivlnvhy*ykiqii*thynltqclykfliskvviintqxnyqli*fxmypmhip
kiqnlklngnvvyievfyxmcicramailnhqlsf*yhvnf*ntnqikvvknllqkv*ll
i*ek*i


Frame B:
---****y*mfiinikfksykhiii*hnaftnf**arw**sihsxiin*fnfxcilcisr
ryri*n*metwct*rcftxcvyaerwry*tinsvfntmsifktqirsrw*ricskkfnc*
fkksky


Frame C:
---nnnsikcslli*nsnhintl*FNTMPLQIFNKQGGNNQYTVXLSIDLISXVSYAYPE
DTEFEIEWKRGVHRGVLPXVYMQSDGDIKPSTQFLIPCQFLKHKSDQGGEEFAPKSLIVN
LRKVN

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB121 (VSB121Q) /CSM/VS/VSB1-A/VSB121Q.Seq.d/                        611   e-174
VSC433 (VSC433Q) /CSM/VS/VSC4-B/VSC433Q.Seq.d/                        367   e-101
SSI184 (SSI184Q) /CSM/SS/SSI1-D/SSI184Q.Seq.d/                         38   0.093
VHP822 (VHP822Q) /CSM/VH/VHP8-A/VHP822Q.Seq.d/                         36   0.37
VHN186 (VHN186Q) /CSM/VH/VHN1-D/VHN186Q.Seq.d/                         36   0.37
VFI843 (VFI843Q) /CSM/VF/VFI8-B/VFI843Q.Seq.d/                         36   0.37
VFG559 (VFG559Q) /CSM/VF/VFG5-C/VFG559Q.Seq.d/                         36   0.37
VFC618 (VFC618Q) /CSM/VF/VFC6-A/VFC618Q.Seq.d/                         36   0.37
VFC462 (VFC462Q) /CSM/VF/VFC4-C/VFC462Q.Seq.d/                         36   0.37
SSL232 (SSL232Q) /CSM/SS/SSL2-B/SSL232Q.Seq.d/                         36   0.37

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CB990789|CB990789.1 AGENCOURT_13642655 NIH_MGC_148 Homo sapiens cDNA clone IMAGE:30336403 5', mRNA sequence.    48  0.078  1
G54901|G54901.1 SHGC-100002 Human Homo sapiens STS genomic, sequence tagged site.    46  0.31  1
AQ312934|AQ312934.1 RPCI11-1G10.TVC RPCI-11 Homo sapiens genomic clone RPCI-11-1G10, genomic survey sequence.    46  0.31  1
CB230017|CB230017.1 AGENCOURT_11502403 NICHD_Rh_Ov1 Macaca mulatta cDNA clone IMAGE:6882796 5', mRNA sequence.    46  0.31  1
AA488024|AA488024.1 ab12d10.r1 Stratagene lung (#937210) Homo sapiens cDNA clone IMAGE:840595 5', mRNA sequence.    46  0.31  1
AC096155|AC096155.6 Rattus norvegicus clone CH230-10I2, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    40  0.45  6
AZ133871|AZ133871.1 OSJNBb0112N05r CUGI Rice BAC Library (EcoRI) Oryza sativa genomic clone OSJNBb0112N05r, genomic survey sequence.    40  0.62  2
AC020556|AC020556.7 Homo sapiens BAC clone RP11-507B10 from 4, complete sequence.    48  0.71  4
AC083850|AC083850.2 Homo sapiens chromosome 2 clone RP11-199A2, WORKING DRAFT SEQUENCE, 13 unordered pieces.    44  1.2  1
AC096550|AC096550.2 Homo sapiens BAC clone RP11-20F13 from 2, complete sequence.    44  1.2  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL445564_163(AL445564|pid:none) Mycoplasma pulmonis (strain UAB ...    34   1.9
CP000283_435(CP000283|pid:none) Rhodopseudomonas palustris BisB5...    33   3.2

 psg: 0.81  gvh: 0.51  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSB121 is cyt

>VSB121Z.Seq
----------AATAATAATAATAGTATTAAATGTTCATTATTAATATAAAATTCAAATCA
TATAAACACATTATAATTTAACACAATGCCTTTACAAATTTTTAATAAGCAAGGTGGTAA
TAATCAATACACAGTTNAATTATCAATTGATTTAATTTCANATGTATCCTATGCATATCC
CGAAGATACAGAATTTGAAATTGAATGGAAACGTGGTGTACATAGAGGTGTTTTACCANA
TGTGTATATGCAGAGCGATGGCGATATTAAACCATCAACTCAGTTTTTAATACCATGTCA
ATTTTTAAAACACAAATCAGATCAAGGTGGTGAAGAATTTGCTCCAAAAAGTTTAATTGT
TAATTTAAGAAAAGTAAATAT