>VSA820 (VSA820Q) /CSM/VS/VSA8-A/VSA820Q.Seq.d/
XXXXXXXXXXAGTCATGAAATTATTTCGTGGGTCAAATTAATTATTTTATTTTTACTTTA
ATTGACACCCCACCTTTTTTTTTTTCTTTTTTTATTATTTTTTTAATTTTATTTTATTTT
TTATTTTTTTNTNATTTATTTTTTATTTTTGCACAGATACGAATTCAAAATTAATTATAA
TTTCACCATATACTTTTCCACACGTATACATAAATATAAATAATATTTTTAAAAAATATA
AATATATACATATAATAATAATTTTTAAAAAAAAAAAAAAAAAAA

---vmklfrgsn*lfyfyfn*HPTFFFFFFYYFFNFILFFIFXXFIFYFCTDTNSKLIII
SPYTFPHVYININNIFKKYKYIHIIIIFKKKKKK

Frame A:
---vmklfrgsn*lfyfyfn*HPTFFFFFFYYFFNFILFFIFXXFIFYFCTDTNSKLIII
SPYTFPHVYININNIFKKYKYIHIIIIFKKKKKK


Frame B:
---s*nyfvgqinyfiftlidtppfffsffiiflilfyflffxxlffifaqiriqn*l*f
hhilfhtyt*i*iiflkniniyi***flkkkkkk


Frame C:
---heiiswvkliilfll*ltphlffflfllff*fyfifyffxiyflflhryefkinynf
tiyfstrihkyk*yf*ki*iytynnnf*kkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA820 (VSA820Q) /CSM/VS/VSA8-A/VSA820Q.Seq.d/                        127   1e-28
SLC572 (SLC572Q) /CSM/SL/SLC5-C/SLC572Q.Seq.d/                         40   0.017
VFO578 (VFO578Q) /CSM/VF/VFO5-D/VFO578Q.Seq.d/                         38   0.069
SSF117 (SSF117Q) /CSM/SS/SSF1-A/SSF117Q.Seq.d/                         38   0.069
SSE472 (SSE472Q) /CSM/SS/SSE4-C/SSE472Q.Seq.d/                         38   0.069
SLI672 (SLI672Q) /CSM/SL/SLI6-C/SLI672Q.Seq.d/                         38   0.069
SLF212 (SLF212Q) /CSM/SL/SLF2-A/SLF212Q.Seq.d/                         38   0.069
SHH102 (SHH102Q) /CSM/SH/SHH1-A/SHH102Q.Seq.d/                         38   0.069
CFI450 (CFI450Q) /CSM/CF/CFI4-C/CFI450Q.Seq.d/                         38   0.069
VSK172 (VSK172Q) /CSM/VS/VSK1-C/VSK172Q.Seq.d/                         36   0.27

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CC192330|CC192330.1 CH261-56K23 CH261 Gallus gallus genomic clone CH261-56K23, DNA sequence.    50  0.015  1
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          38  0.044  4
BZ598899|BZ598899.1 WHADX31TF Human MCF7 breast cancer cell line library (MCF7_1) Homo sapiens genomic clone MCF7_1-24F14, DNA sequence.    48  0.057  1
BX571775|BX571775.2 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-141C21.    48  0.057  1
BU497469|BU497469.1 PfESToab63g08.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9UWE0 Q9UWE0 DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE. ;, mRNA sequence.    38  0.071  2
BM275682|BM275682.1 PfESToaa56b07.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to TR:Q9UWE0 Q9UWE0 DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE. ;, mRNA sequence.    38  0.078  2
BH794245|BH794245.1 ME_MBa0002J09f Manihot esculenta Manihot esculenta genomic clone ME_MBa0002J09f, DNA sequence.    30  0.14  3
AC019944|AC019944.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    42  0.15  3
BE690532|BE690532.1 uw55b01.x1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone IMAGE:3465865 3', mRNA sequence.    46  0.23  1
AL645545|AL645545.8 Mouse DNA sequence from clone RP23-203J4 on chromosome X.    44  0.29  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 196,551,022

 psg: 1.00  gvh: 0.46  alm: 0.26  top: 0.43  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.23  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for VSA820 is mit

>VSA820Z.Seq
----------AGTCATGAAATTATTTCGTGGGTCAAATTAATTATTTTATTTTTACTTTA
ATTGACACCCCACCTTTTTTTTTTTCTTTTTTTATTATTTTTTTAATTTTATTTTATTTT
TTATTTTTTTNTNATTTATTTTTTATTTTTGCACAGATACGAATTCAAAATTAATTATAA
TTTCACCATATACTTTTCCACACGTATACATAAATATAAATAATATTTTTAAAAAATATA
AATATATACATATAATAATAATTTTTAAAAAAAAAAAAAAAAAAA