NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSA803
Library VS
(Link to library)
Clone ID VSA803
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15504-1
Original site URL
Representative seq. ID VSA803Z
(Link to Original site)
Representative DNA sequence 
>VSA803 (VSA803Q) /CSM/VS/VSA8-A/VSA803Q.Seq.d/
XXXXXXXXXXCTGATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATTCTAC
ACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTACTACAAAGCAGGTGAA
GTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGAATCAGTTAAATATTAAAATAAT
TTTTTCAAANTGTTATAATAAATGGTCTTATAAAAATAACNAAAAAAAAAATAAACNATA
TAAAAAAAAAGAAAATATAAATAAAAANAAA
sequence update 2000. 2.28
Translated Amino Acid sequence 
---DFVKSVLGKFDEYKFYTGENMDADGHVALMYYKAGEVDPIFLYFKDGLESVKY*nnf
fkxl**mvl*k*xkkk*ti*kkrkyk*kx
Translated Amino Acid sequence (All Frames) 
Frame A:
---*fcqissr*irriqilhw*kygc*wscrfnvlqsr*s*snlfilqrrfris*ilk*f
fqxviinglikitkkkinxikkkki*ikx


Frame B:
---DFVKSVLGKFDEYKFYTGENMDADGHVALMYYKAGEVDPIFLYFKDGLESVKY*nnf
fkxl**mvl*k*xkkk*ti*kkrkyk*kx


Frame C:
---ilsnqfsvnstntnstlvkiwmlmvmsl*cttkqvkliqsfytsktv*nqlnikiif
sxcynkwsyknnxkknkxykkkeninkxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA803 (VSA803Q) /CSM/VS/VSA8-A/VSA803Q.Seq.d/                        392   e-108
VSJ764 (VSJ764Q) /CSM/VS/VSJ7-C/VSJ764Q.Seq.d/                        385   e-106
VSI865 (VSI865Q) /CSM/VS/VSI8-C/VSI865Q.Seq.d/                        385   e-106
VSI668 (VSI668Q) /CSM/VS/VSI6-C/VSI668Q.Seq.d/                        385   e-106
VSE792 (VSE792Q) /CSM/VS/VSE7-D/VSE792Q.Seq.d/                        385   e-106
VSE695 (VSE695Q) /CSM/VS/VSE6-D/VSE695Q.Seq.d/                        385   e-106
VSE681 (VSE681Q) /CSM/VS/VSE6-D/VSE681Q.Seq.d/                        385   e-106
VSE636 (VSE636Q) /CSM/VS/VSE6-B/VSE636Q.Seq.d/                        385   e-106
VSE615 (VSE615Q) /CSM/VS/VSE6-A/VSE615Q.Seq.d/                        385   e-106
VSE394 (VSE394Q) /CSM/VS/VSE3-D/VSE394Q.Seq.d/                        385   e-106
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BJ165766|BJ165766.1 Physcomitrella patens subsp. patens cDNA clone:pph5j04, 3' end, single read.    46  0.21  1
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    46  0.21  1
AC096608|AC096608.7 Rattus norvegicus clone CH230-191M17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    44  0.85  1
AC114467|AC114467.7 Rattus norvegicus clone CH230-44I9, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    44  0.85  1
AL162759|AL162759.4 Human chromosome 14 DNA sequence BAC R-785G15 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    44  0.85  1
AC073103|AC073103.3 Homo sapiens chromosome 7 clone RP11-460C21, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  0.85  1
BH712015|BH712015.1 BOHZT57TF BO_2_3_KB Brassica oleracea genomic clone BOHZT57, DNA sequence.    44  0.85  1
BD143156|BD143156.1 Alkali pullulanase.                           34  1.0  2
AC145757|AC145757.1 Microcebus murinus clone CH257-115P14, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42  1.3  2
BD143155|BD143155.1 Alkali pullulanase.                           34  1.4  2
dna update 2003. 8.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT047990_1(BT047990|pid:none) Salmo salar clone ssal-eve-544-022...    61   1e-08
BT058568_1(BT058568|pid:none) Salmo salar clone Contig1935 Trans...    59   5e-08
(Q10344) RecName: Full=Translationally-controlled tumor protein ...    57   2e-07
(P43348) RecName: Full=Translationally-controlled tumor protein;...    57   2e-07
AK159516_1(AK159516|pid:none) Mus musculus osteoclast-like cell ...    56   3e-07
AK151375_1(AK151375|pid:none) Mus musculus bone marrow macrophag...    56   3e-07
AK296587_1(AK296587|pid:none) Homo sapiens cDNA FLJ57738 complet...    56   3e-07
BT079938_1(BT079938|pid:none) Esox lucius clone eluc-evq-522-138...    56   3e-07
AK150500_1(AK150500|pid:none) Mus musculus bone marrow macrophag...    56   3e-07
(Q4PF30) RecName: Full=Translationally-controlled tumor protein ...    55   6e-07
protein update 2009. 7.27
PSORT 

 psg: 0.54  gvh: 0.32  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VSA803 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSA803Z
3' end seq. 
>VSA803Z.Seq
----------CTGATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATTCTAC
ACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTACTACAAAGCAGGTGAA
GTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGAATCAGTTAAATATTAAAATAAT
TTTTTCAAANTGTTATAATAAATGGTCTTATAAAAATAACNAAAAAAAAAATAAACNATA
TAAAAAAAAAGAAAATATAAATAAAAANAAA
Length of 3' end seq. 261
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -