>VSA791 (VSA791Q) /CSM/VS/VSA7-D/VSA791Q.Seq.d/
XXXXXXXXXXAAAAAAAAAAAAAAAACTTTCAATTCCCATTTATGTGTAACCTAAAATAA
AAAAAAAAAAAAAAAAAAAAAACCAATATTATTACTATATTTGGTTATAATTGTAAAAAG
AAAAAATAAAAAAAAAAAAATAATTCTTTTTTTATTTACATATTATTATTTTTTCAATTT
AAAAAAAAAAAAAAAAAAAACTTTCAATTCCAATTTATGTGTAACCTAAAATAAA

---kkkktfnshlcvt*NKKKKKKKKPILLLYLVIIVKRKNKKKKIILFLFTYYYFFNLK
KKKKKTFNSNLCVT*nk

Frame A:
---kkkkklsipiyv*pkikkkkkkknqyyyyiwl*l*kekikkkk*fffylhiiifsi*
kkkkkklsipiyv*pki


Frame B:
---kkkknfqfpfmcnlk*kkkkkkktniitifgynckkkk*kkknnsffiyillffqfk
kkkkknfqfqfmcnlk*


Frame C:
---kkkktfnshlcvt*NKKKKKKKKPILLLYLVIIVKRKNKKKKIILFLFTYYYFFNLK
KKKKKTFNSNLCVT*nk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA791 (VSA791Q) /CSM/VS/VSA7-D/VSA791Q.Seq.d/                         80   2e-14
SSF412 (SSF412Q) /CSM/SS/SSF4-A/SSF412Q.Seq.d/                         70   2e-11
VSB607 (VSB607Q) /CSM/VS/VSB6-A/VSB607Q.Seq.d/                         64   1e-09
VSA572 (VSA572Q) /CSM/VS/VSA5-C/VSA572Q.Seq.d/                         64   1e-09
SSA784 (SSA784Q) /CSM/SS/SSA7-D/SSA784Q.Seq.d/                         58   6e-08
CFC634 (CFC634Q) /CSM/CF/CFC6-B/CFC634Q.Seq.d/                         42   0.004
VSB587 (VSB587Q) /CSM/VS/VSB5-D/VSB587Q.Seq.d/                         38   0.056
VSD131 (VSD131Q) /CSM/VS/VSD1-B/VSD131Q.Seq.d/                         36   0.22
VHC309 (VHC309Q) /CSM/VH/VHC3-A/VHC309Q.Seq.d/                         36   0.22
VFJ795 (VFJ795Q) /CSM/VF/VFJ7-D/VFJ795Q.Seq.d/                         36   0.22

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL353749|AL353749.3 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-138O18.    48  0.046  1
AL354989|AL354989.13 Human DNA sequence from clone RP11-537H15 on chromosome 9.    48  0.046  1
AX348685|AX348685.1 Sequence 143 from Patent WO0202807.           38  0.14  3
AX345984|AX345984.1 Sequence 1055 from Patent WO0200928.          38  0.14  3
AX281417|AX281417.1 Sequence 81 from Patent WO0177376.            38  0.14  3
AC110193|AC110193.4 Mus musculus clone RP23-236N16, WORKING DRAFT SEQUENCE, 16 ordered pieces.    46  0.18  1
CB832903|CB832903.1 USDA-FP_100931 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-13_A10 5', mRNA sequence.    46  0.18  1
CB832901|CB832901.1 USDA-FP_100929 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-13_A08 5', mRNA sequence.    46  0.18  1
CB832902|CB832902.1 USDA-FP_100930 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-13_A09 5', mRNA sequence.    46  0.18  1
CB909967|CB909967.1 USDA-FP_101710 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-24_C08 5', mRNA sequence.    46  0.18  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 150,123,663

 psg: 0.95  gvh: 0.36  alm: 0.49  top: 0.33  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 0.77  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VSA791 is nuc

>VSA791Z.Seq
----------AAAAAAAAAAAAAAAACTTTCAATTCCCATTTATGTGTAACCTAAAATAA
AAAAAAAAAAAAAAAAAAAAAACCAATATTATTACTATATTTGGTTATAATTGTAAAAAG
AAAAAATAAAAAAAAAAAAATAATTCTTTTTTTATTTACATATTATTATTTTTTCAATTT
AAAAAAAAAAAAAAAAAAAACTTTCAATTCCAATTTATGTGTAACCTAAAATAAA