>VSA784 (VSA784Q) /CSM/VS/VSA7-D/VSA784Q.Seq.d/
AATTTTAGTTGGTTCCACATAACATAAACATGTCCGCCTTAGACTACGCCACTTTAATCT
TACACGACGCCAAATTAGCAATCACTGCTGATAACCTCGTTGCCTTATGCAATGCCGCTG
GTGTCAAAGTTGAAAAATTCAAAGCTGATTTATATGCTAGCACCTTAGAAAAGAAGAAGG
TTGATTCAATCTTATCCGTCAGTGCTGCTGCTGCTGCCCCAGCTGCCGCTGCTGCTCCAG
TTGCTGCCGCCGCCGCCGCTCCAGCCAAGAAAGTCGTCGAAGAAAAGAAAGAAGAATCAG
ATGACGATATGGGTATGGGTCTCTTCGATTAAAAGTGCCTTTAATTTAAGCAAACTTTTG
ATATGTTTATAAATAAAAAAAATTTT

f*LVPHNINMSALDYATLILHDAKLAITADNLVALCNAAGVKVEKFKADLYASTLEKKKV
DSILSVSAAAAAPAAAAAPVAAAAAAPAKKVVEEKKEESDDDMGMGLFD*kcl*fkqtfd
mfinkknf

Frame A:
nfswfhit*tcpp*ttpl*syttpn*qsllitslpyamplvsklknskliymlap*krrr
liqsypsvllllpqlplllqllpppplqprksskkrkknqmtiwvwvssiksafnlskll
icl*ikki


Frame B:
ilvgst*hkhvrlrlrhfnltrrqisnhc**prclmqcrwcqs*kiqs*fic*hlrkeeg
*fnlirqcccccpscrccssccrrrrssqesrrrkerrir*rygygslrlkvpli*anf*
yvyk*kkf


Frame C:
f*LVPHNINMSALDYATLILHDAKLAITADNLVALCNAAGVKVEKFKADLYASTLEKKKV
DSILSVSAAAAAPAAAAAPVAAAAAAPAKKVVEEKKEESDDDMGMGLFD*kcl*fkqtfd
mfinkknf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG210 (VSG210Q) /CSM/VS/VSG2-A/VSG210Q.Seq.d/                        398   e-110
VSA784 (VSA784Q) /CSM/VS/VSA7-D/VSA784Q.Seq.d/                        398   e-110
VHM306 (VHM306Q) /CSM/VH/VHM3-A/VHM306Q.Seq.d/                        398   e-110
VSH627 (VSH627Q) /CSM/VS/VSH6-B/VSH627Q.Seq.d/                        385   e-106
VSA684 (VSA684Q) /CSM/VS/VSA6-D/VSA684Q.Seq.d/                        341   5e-93
VSF438 (VSF438Q) /CSM/VS/VSF4-B/VSF438Q.Seq.d/                        178   4e-44
VFG702 (VFG702Q) /CSM/VF/VFG7-A/VFG702Q.Seq.d/                        105   5e-22
VFF227 (VFF227Q) /CSM/VF/VFF2-B/VFF227Q.Seq.d/                        105   5e-22
SLI750 (SLI750Q) /CSM/SL/SLI7-C/SLI750Q.Seq.d/                        103   2e-21
SLI743 (SLI743Q) /CSM/SL/SLI7-B/SLI743Q.Seq.d/                        103   2e-21

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X56194|X56194.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P0.   103   3e-22  2
X56192|X56192.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P2.    78   1e-10  1
BE188396|BE188396.1 PvB 194 L99-22 Penaeus vannamei cDNA similar to 60S Acidic Ribosomal Protein P2, mRNA sequence.    46   2e-06  2
CD203589|CD203589.1 Ls_AM1_10H07_T7 Litomosoides sigmodontis adult male 1 Litomosoides sigmodontis cDNA clone Ls_AM1_10H07 5', mRNA sequence.    58   4e-06  2
AL386978|AL386978.1 Medicago truncatula EST MtBC39A08F1 : T3 end of clone MtBC39A08 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    62   6e-06  1
AL382812|AL382812.1 Medicago truncatula EST MtBC10B03F1 : T3 end of clone MtBC10B03 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    62   6e-06  1
BM439242|BM439242.1 GIT0000050 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence.    62   6e-06  1
AL382813|AL382813.1 Medicago truncatula EST MtBC10B03R1 : T7 end of clone MtBC10B03 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    62   6e-06  1
CF200446|CF200446.1 GIT1448 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence.    62   6e-06  1
CF601244|CF601244.1 tac46e01.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:RLA1_CHICK P18660 60S ACIDIC RIBOSOMAL PROTEIN P1. ;, mRNA sequence.    46   2e-05  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU928175_385(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    56   5e-07
CR382126_241(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    54   2e-06
AL033497_3(AL033497|pid:none) C.albicans cosmid Ca49C10.  &T5214...    54   2e-06
(P29763) RecName: Full=60S acidic ribosomal protein P1;  &R6KM1C...    54   2e-06
(P10622) RecName: Full=60S acidic ribosomal protein P1-beta;    ...    54   2e-06
AE016817_656(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...    53   3e-06
AY558526_1(AY558526|pid:none) Saccharomyces cerevisiae clone FLH...    53   4e-06
CP000496_606(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    52   7e-06
CR382128_495(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    51   1e-05
CP000500_166(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    51   1e-05

 psg: 0.74  gvh: 0.55  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for VSA784 is cyt

>VSA784E.Seq
AATTTTAGTTGGTTCCACATAACATAAACATGTCCGCCTTAGACTACGCCACTTTAATCT
TACACGACGCCAAATTAGCAATCACTGCTGATAACCTCGTTGCCTTATGCAATGCCGCTG
GTGTCAAAGTTGAAAAATTCAAAGCTGATTTATATGCTAGCACCTTAGAAAAGAAGAAGG
TTGATTCAATCTTATCCGTCAGTGCTGCTGCTGCTGCCCCAGCTGCCGCTGCTGCTCCAG
TTGCTGCCGCCGCCGCCGCTCCAGCCAAGAAAGTCGTCGAAGAAAAGAAAGAAGAATCAG
ATGACGATATGGGTATGGGTCTCTTCGATTAAAAGTGCCTTTAATTTAAGCAAACTTTTG
ATATGTTTATAAATAAAAAAAATTTT