>VSA776 (VSA776Q) /CSM/VS/VSA7-D/VSA776Q.Seq.d/
XXXXXXXXXXAAAAGCCACCTTATTTTCTTTAAATAATAATTAATAATCTTAATAGTATA
ATGAAATGACATTTGTTAAAGGTGTTTGTTTCGATCCAGCTCAAGCAAAGAAATCAGTTT
TAGATGTTAAAGAAACTCTTTTAAATTTAGAAACCCAAGTAAAGAAAACTTCATTATCAA
AAGATGAAGCTGTAGATGCTTATAAAATTTATGAAACTTTACCACTCACTTTCCAAATCA
ATTGGTCTATTGCAGGTGAAGATGCTAATGAAAACCAAAAAGTTGCAGATTTCTGTAGAG
ACAAATTAAATGAATTAAATCATGTCCATAATTTTACATCATCTAAAATTCCAAGAGCTT
TCAATGCTGATAATAGTTATTAAATATATATGAATAATAATAATAATAATAATAATAATA
ATCAATAATCAATAATAATTAATAATAATAATTCTTTAAAATAGAAATTGTTGTCTACTT
GTAAATATATAAATAAAATAAACCAAATCTTTAAACACTTAA

---katlfslnnn**s**YNEMTFVKGVCFDPAQAKKSVLDVKETLLNLETQVKKTSLSK
DEAVDAYKIYETLPLTFQINWSIAGEDANENQKVADFCRDKLNELNHVHNFTSSKIPRAF
NADNSY*iymnnnnnnnnnnq*siiinnnnslk*kllstckyinkinqifkhl

Frame A:
---katlfslnnn**s**YNEMTFVKGVCFDPAQAKKSVLDVKETLLNLETQVKKTSLSK
DEAVDAYKIYETLPLTFQINWSIAGEDANENQKVADFCRDKLNELNHVHNFTSSKIPRAF
NADNSY*iymnnnnnnnnnnq*siiinnnnslk*kllstckyinkinqifkhl


Frame B:
---kppyfl*iiinnlnsimk*hllkvfvsiqlkqrnqf*mlkklf*i*kpk*rklhyqk
mkl*mlikfmklyhslsksigllqvkmlmktkklqisvetn*mn*imsiilhhlkfqels
mliivikyi*iiiiiiiiiinnq**liiiil*nrnccllvni*ik*tkslnt*


Frame C:
---shliffk**liiliv**ndic*rclfrsssskeisfrc*rnsfkfrnpskenfiikr
*scrcl*nl*nftthfpnqlvycr*rc**kpkscrfl*rqik*ikscp*fyii*nsksfq
c***llniye*********siinnn****ffkieivvyl*iyk*nkpnl*tl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA776 (VSA776Q) /CSM/VS/VSA7-D/VSA776Q.Seq.d/                        712   0.0
VSE132 (VSE132Q) /CSM/VS/VSE1-B/VSE132Q.Seq.d/                        704   0.0
SSC372 (SSC372Q) /CSM/SS/SSC3-C/SSC372Q.Seq.d/                        704   0.0
FC-BM09 (FC-BM09Q) /CSM/FC/FC-BM/FC-BM09Q.Seq.d/                      704   0.0
CHP894 (CHP894Q) /CSM/CH/CHP8-D/CHP894Q.Seq.d/                        690   0.0
VFJ882 (VFJ882Q) /CSM/VF/VFJ8-D/VFJ882Q.Seq.d/                        680   0.0
VHI678 (VHI678Q) /CSM/VH/VHI6-D/VHI678Q.Seq.d/                         42   0.008
SHH721 (SHH721Q) /CSM/SH/SHH7-A/SHH721Q.Seq.d/                         42   0.008
CHQ209 (CHQ209Q) /CSM/CH/CHQ2-A/CHQ209Q.Seq.d/                         42   0.008
VSI855 (VSI855Q) /CSM/VS/VSI8-C/VSI855Q.Seq.d/                         40   0.033

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX348947|AX348947.1 Sequence 405 from Patent WO0202807.           44  3e-04  3
AX345278|AX345278.1 Sequence 349 from Patent WO0200928.           44  3e-04  3
AX251786|AX251786.1 Sequence 47 from Patent WO0168911.            44  3e-04  3
AJ404228|AJ404228.1 Saccharomyces douglasii mitochondrial tRNA gene cluster.    50  0.005  2
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    40  0.011  6
U87145|U87145.2 Toxoplasma gondii chloroplast, complete genome.    40  0.011  4
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38  0.015  10
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    42  0.032  8
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           42  0.054  6
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                 32  0.061  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000924_290(CP000924|pid:none) Thermoanaerobacter pseudethanoli...    33   5.5
CP000923_766(CP000923|pid:none) Thermoanaerobacter sp. X514, com...    33   5.5
CU928170_238(CU928170|pid:none) Kluyveromyces thermotolerans str...    32   7.2
AP009388_29(AP009388|pid:none) Burkholderia multivorans ATCC 176...    32   9.4
AM295250_76(AM295250|pid:none) Staphylococcus carnosus subsp. ca...    32   9.4

 psg: 0.73  gvh: 0.47  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VSA776 is cyt

>VSA776Z.Seq
----------AAAAGCCACCTTATTTTCTTTAAATAATAATTAATAATCTTAATAGTATA
ATGAAATGACATTTGTTAAAGGTGTTTGTTTCGATCCAGCTCAAGCAAAGAAATCAGTTT
TAGATGTTAAAGAAACTCTTTTAAATTTAGAAACCCAAGTAAAGAAAACTTCATTATCAA
AAGATGAAGCTGTAGATGCTTATAAAATTTATGAAACTTTACCACTCACTTTCCAAATCA
ATTGGTCTATTGCAGGTGAAGATGCTAATGAAAACCAAAAAGTTGCAGATTTCTGTAGAG
ACAAATTAAATGAATTAAATCATGTCCATAATTTTACATCATCTAAAATTCCAAGAGCTT
TCAATGCTGATAATAGTTATTAAATATATATGAATAATAATAATAATAATAATAATAATA
ATCAATAATCAATAATAATTAATAATAATAATTCTTTAAAATAGAAATTGTTGTCTACTT
GTAAATATATAAATAAAATAAACCAAATCTTTAAACACTTAA