VSA762
Library VS
(Link to library)
Clone ID VSA762
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06309-1
Original site URL
Representative seq. ID VSA762E
(Link to Original site)
Representative DNA sequence
>VSA762 (VSA762Q) /CSM/VS/VSA7-C/VSA762Q.Seq.d/
AAAATATTTAAAGTCTATAGTAGTAGTAAATGGAAAACAAATTGAATCAGATTGGAAAAA
GAGTAAAAAAGAATCTGAAAAAGATTGTGCAAAGAATATATTAGAGTTTATAGAAACACT
AGATGGATATCCTATATACTTCACACCATTCAGTAAAGACCCCCCACAAAATAATAAAAA
AAAAAAAATTAAAA
sequence update 2000. 2.21
Translated Amino Acid sequence
KYLKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKK
KKIK


Translated Amino Acid sequence (All Frames)
Frame A:
kifkvyssskwktn*irleke*kri*krlckeyirvyrntrwisyilhtiq*rpptk**k
kkn*


Frame B:
KYLKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKK
KKIK


Frame C:
ni*sl****menklnqigkrvkknlkkivqriy*sl*kh*mdilytshhsvktphkiikk
kklk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSA762 (VSA762Q) /CSM/VS/VSA7-C/VSA762Q.Seq.d/ 157 7e-38
VSH216 (VSH216Q) /CSM/VS/VSH2-A/VSH216Q.Seq.d/ 32 2.8
VHK584 (VHK584Q) /CSM/VH/VHK5-D/VHK584Q.Seq.d/ 32 2.8
VHJ171 (VHJ171Q) /CSM/VH/VHJ1-C/VHJ171Q.Seq.d/ 32 2.8
VHH424 (VHH424Q) /CSM/VH/VHH4-A/VHH424Q.Seq.d/ 32 2.8
VHG354 (VHG354Q) /CSM/VH/VHG3-C/VHG354Q.Seq.d/ 32 2.8
VHD777 (VHD777Q) /CSM/VH/VHD7-D/VHD777Q.Seq.d/ 32 2.8
VHD704 (VHD704Q) /CSM/VH/VHD7-A/VHD704Q.Seq.d/ 32 2.8
VHA788 (VHA788Q) /CSM/VH/VHA7-D/VHA788Q.Seq.d/ 32 2.8
SHL384 (SHL384Q) /CSM/SH/SHL3-D/SHL384Q.Seq.d/ 32 2.8

own update 2003. 1. 8
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL603886|AL603886.2 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-356P2. 32 5.8 5
AL591769|AL591769.3 Human chromosome 14 DNA sequence BAC R-600G2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human). 40 11 1
AC021839|AC021839.3 Homo sapiens chromosome 14 clone RP11-46A6 map 14, WORKING DRAFT SEQUENCE, 19 unordered pieces. 40 11 1
AL033396|AL033396.1 C.albicans cosmid Ca35A5. 40 11 1
BX511216|BX511216.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 40 11 1
BG985843|BG985843.1 5102t3 NICHD Zebrafish normalized I Danio rerio cDNA clone 5102, mRNA sequence. 40 11 1

dna update 2004. 3.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM285329_10(AM285329|pid:none) Spiroplasma citri GII3-3X chromos... 32 9.2
AM285328_6(AM285328|pid:none) Spiroplasma citri GII3-3X chromoso... 32 9.2

protein update 2009. 3.19
PSORT

psg: 0.74 gvh: 0.24 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.20 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
28.0 %: cytoplasmic
4.0 %: peroxisomal

>> prediction for VSA762 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA762E
Full length Seq.
>VSA762E.Seq
AAAATATTTAAAGTCTATAGTAGTAGTAAATGGAAAACAAATTGAATCAGATTGGAAAAA
GAGTAAAAAAGAATCTGAAAAAGATTGTGCAAAGAATATATTAGAGTTTATAGAAACACT
AGATGGATATCCTATATACTTCACACCATTCAGTAAAGACCCCCCACAAAATAATAAAAA
AAAAAAAATTAAAA
Length of full length seq. 194