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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSA753
Library VS
(Link to library)
Clone ID VSA753
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig -
Original site URL
Representative seq. ID VSA753E
(Link to Original site)
Representative DNA sequence 
>VSA753 (VSA753Q) /CSM/VS/VSA7-C/VSA753Q.Seq.d/
CAATCTACAAATATCAACATTGCTATTTTTTACAAATTTTTTTTTAACACATTACCACAC
CAAGTTTTTCTTAATTTTATTTAACACACATACTTTTAAAAAAAAAAAAAAAAAAAATAA
TTTCCAGTTCTATTTTTAAGACCATCATCCTCTATTTATATACCTAAAAAAAAAAAAAGA
ACAAAATGTGGTGGAGATTCCCAAACCTAAGAAACAATTCTAAATATATCAAGAATAAAG
AAGAACAATTATTGGATAATCAAAAAGACAATCATGAATTCATTTCCCAATCAAGAAAAA
GAATTAATTTTGATTAAAATTTTAAAGCCAAATTCATAAAAGAATCATGTAAATAATTTA
AAAAAAAAAAAAATAGCAACCCTTATATGTGTCAAAAAAAATAAAAGAAAAAAAAAAAAA
ACTTTGTAAAT
sequence update 2000. 2.21
Translated Amino Acid sequence 
iykyqhcyflqiff*hittpsfs*fylthillkkkkkkiisssifktiilylyt*KKKKN
KMWWRFPNLRNNSKYIKNKEEQLLDNQKDNHEFISQSRKRINFD*nfkakfikesck*fk
kkknsnpymcqkk*kkkkknfvn
Translated Amino Acid sequence (All Frames) 
Frame A:
qstniniaifykfffntlphqvflnfi*htyf*kkkkkk*fpvlflrpsssiyipkkkkr
tkcggdsqt*etilnisrikknnywiikktimnsfpnqekelilikilkpns*knhvnnl
kkkkiatlicvkknkrkkkktl*


Frame B:
nlqistllfftnfflthyhtkfflilfnthtfkkkkkknnfqfyf*dhhplfiylkkkke
qnvveipkpkkqf*iyqe*rrtiig*skrqs*ihfpikkkn*f*lkf*sqihkrim*ii*
kkkk*qplyvskkikekkkklck


Frame C:
iykyqhcyflqiff*hittpsfs*fylthillkkkkkkiisssifktiilylyt*KKKKN
KMWWRFPNLRNNSKYIKNKEEQLLDNQKDNHEFISQSRKRINFD*nfkakfikesck*fk
kkknsnpymcqkk*kkkkknfvn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC475 (VSC475Q) /CSM/VS/VSC4-D/VSC475Q.Seq.d/                        359   2e-98
VSA753 (VSA753Q) /CSM/VS/VSA7-C/VSA753Q.Seq.d/                        359   2e-98
VSH254 (VSH254Q) /CSM/VS/VSH2-C/VSH254Q.Seq.d/                        133   2e-30
VSI166 (VSI166Q) /CSM/VS/VSI1-C/VSI166Q.Seq.d/                        125   6e-28
VFJ887 (VFJ887Q) /CSM/VF/VFJ8-D/VFJ887Q.Seq.d/                         50   3e-05
VSC615 (VSC615Q) /CSM/VS/VSC6-A/VSC615Q.Seq.d/                         36   0.42
VHG124 (VHG124Q) /CSM/VH/VHG1-A/VHG124Q.Seq.d/                         36   0.42
SLC226 (SLC226Q) /CSM/SL/SLC2-B/SLC226Q.Seq.d/                         36   0.42
CFK257 (CFK257Q) /CSM/CF/CFK2-C/CFK257Q.Seq.d/                         36   0.42
CFJ136 (CFJ136Q) /CSM/CF/CFJ1-B/CFJ136Q.Seq.d/                         36   0.42
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   359   e-165  5
AL139081|AL139081.21 Human DNA sequence from clone RP11-179A7 on chromosome 13.    48   4e-05  2
AC008023|AC008023.2 Homo sapiens clone RP11-45D2, WORKING DRAFT SEQUENCE, 18 unordered pieces.    44   0.003  6
AL672146|AL672146.9 Mouse DNA sequence from clone RP23-390P18 on chromosome X.    34   0.003  8
AC128436|AC128436.3 Rattus norvegicus clone CH230-101P20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    38   0.004  5
AC123602|AC123602.1 Mus musculus clone RP24-448F17, LOW-PASS SEQUENCE SAMPLING.    38   0.007  4
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence.    36   0.008  8
AL035475|AL035475.7 Plasmodium falciparum MAL4P2.                  38   0.015  8
AL646099|AL646099.4 Human DNA sequence from clone RP11-65B7 on chromosome 13q13.3-14.2.    40   0.024  5
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    32   0.034  9
dna update 2004. 3.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86KD3) RecName: Full=Putative uncharacterized protein DDB_G027...    96   3e-19
CP000942_485(CP000942|pid:none) Ureaplasma parvum serovar 3 str....    32   9.2
protein update 2009. 3.19
PSORT 

 psg: 0.55  gvh: 0.00  alm: 0.82  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.04
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VSA753 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA753E
Full length Seq. 
>VSA753E.Seq
CAATCTACAAATATCAACATTGCTATTTTTTACAAATTTTTTTTTAACACATTACCACAC
CAAGTTTTTCTTAATTTTATTTAACACACATACTTTTAAAAAAAAAAAAAAAAAAAATAA
TTTCCAGTTCTATTTTTAAGACCATCATCCTCTATTTATATACCTAAAAAAAAAAAAAGA
ACAAAATGTGGTGGAGATTCCCAAACCTAAGAAACAATTCTAAATATATCAAGAATAAAG
AAGAACAATTATTGGATAATCAAAAAGACAATCATGAATTCATTTCCCAATCAAGAAAAA
GAATTAATTTTGATTAAAATTTTAAAGCCAAATTCATAAAAGAATCATGTAAATAATTTA
AAAAAAAAAAAAATAGCAACCCTTATATGTGTCAAAAAAAATAAAAGAAAAAAAAAAAAA
ACTTTGTAAAT
Length of full length seq. 431