VSA751
Library VS
(Link to library)
Clone ID VSA751
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12612-1
Original site URL
Representative seq. ID VSA751E
(Link to Original site)
Representative DNA sequence
>VSA751 (VSA751Q) /CSM/VS/VSA7-C/VSA751Q.Seq.d/
CAGATACAAAATGGTCAGAATCAGTGTTTTAAACGATTGCTTAAACTCCATTGTCAATGC
CGAAAGACAAGGTAAAAGACAAGTCTTAGTCAGACCATCATCAAAAGTCATCGTTAAATT
CTTAGAAGTTATGATGAAAAAGAGATACATTGGTGAATTCGAAATCGTTGATGACCATCG
TTCCGGTAAAATTGTCATTGATTTAATCGGTCGTATCAACAAATGTGGTGTCATCTCCCC
AAGATTTGACGTTACTTTAGACGAAATCGAAAAATGGGCCTCTTACTTACTCCCATCCCG
TCAATTCGGTCATATCGTCCTCACCACCTCCCTCGGTATCATGGACCACAACGAAGCCAA
AACCAGACACACTGGTGGTAAATTATTAGGTTTCTTCTATTAAATTGCTAGTCTTTTTTA
AATAAAATTAAAATATTATTTAAATCCTTTAAAAAAAAAAAAAAAAACAAAAAAACAA
sequence update 2000. 2.21
Translated Amino Acid sequence
RYKMVRISVLNDCLNSIVNAERQGKRQVLVRPSSKVIVKFLEVMMKKRYIGEFEIVDDHR
SGKIVIDLIGRINKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAK
TRHTGGKLLGFFY*iaslf*iklkyylnplkkkkktkkq


Translated Amino Acid sequence (All Frames)
Frame A:
qiqngqnqcfkrllklhcqcrktr*ktslsqtiikshr*ilrsydekeihw*irnr**ps
fr*nch*fnrsyqqmwchlpki*ryfrrnrkmgllltpipsirsyrphhlpryhgpqrsq
nqthww*iirflllnc*sflnkikilfksfkkkkknkkt


Frame B:
RYKMVRISVLNDCLNSIVNAERQGKRQVLVRPSSKVIVKFLEVMMKKRYIGEFEIVDDHR
SGKIVIDLIGRINKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAK
TRHTGGKLLGFFY*iaslf*iklkyylnplkkkkktkkq


Frame C:
dtkwsesvf*tia*tplsmpkdkvkdks*sdhhqksslns*kl**krdtlvnskslmtiv
pvklsli*svvstnvvsspqdltll*tkskngpltyshpvnsvissspppsvswtttkpk
pdtlvvny*vssikllvffk*n*nii*il*kkkkkqkn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ633 (VSJ633Q) /CSM/VS/VSJ6-B/VSJ633Q.Seq.d/ 892 0.0
VSH391 (VSH391Q) /CSM/VS/VSH3-D/VSH391Q.Seq.d/ 892 0.0
VSE466 (VSE466Q) /CSM/VS/VSE4-C/VSE466Q.Seq.d/ 892 0.0
VSA751 (VSA751Q) /CSM/VS/VSA7-C/VSA751Q.Seq.d/ 892 0.0
VFD211 (VFD211Q) /CSM/VF/VFD2-A/VFD211Q.Seq.d/ 892 0.0
SSF559 (SSF559Q) /CSM/SS/SSF5-C/SSF559Q.Seq.d/ 892 0.0
VSI567 (VSI567Q) /CSM/VS/VSI5-C/VSI567Q.Seq.d/ 890 0.0
VSK154 (VSK154Q) /CSM/VS/VSK1-C/VSK154Q.Seq.d/ 880 0.0
VSI476 (VSI476Q) /CSM/VS/VSI4-D/VSI476Q.Seq.d/ 854 0.0
AFJ856 (AFJ856Q) /CSM/AF/AFJ8-C/AFJ856Q.Seq.d/ 799 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence. 892 0.0 3
U27539|U27539.1 Dictyostelium discoideum 40S ribosomal protein S24 mRNA, complete cds. 817 0.0 1
AX073276|AX073276.1 Sequence 387 from Patent WO0102550. 66 1e-19 4
AF365406|AF365406.1 Candida albicans YIP3-like protein (YIP3) gene, partial cds; and ribosomal protein L39 (RPL39), ribosomal protein S22 (RPS22), and ribosomal protein S14 (RPS14) genes, complete cds. 66 2e-19 3
BI743342|BI743342.1 kx41g12.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:RS1A_STRPU P33095 40S RIBOSOMAL PROTEIN S15A ;, mRNA sequence. 80 1e-18 3
BG661408|BG661408.1 kx01e04.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RS1A_HUMAN P39027 40S RIBOSOMAL PROTEIN S15A. [1] ;, mRNA sequence. 80 1e-18 3
BG661537|BG661537.1 kx03b05.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RS1A_HUMAN P39027 40S RIBOSOMAL PROTEIN S15A. [1] ;, mRNA sequence. 80 2e-18 3
BG661715|BG661715.1 kx05e02.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RS1A_HUMAN P39027 40S RIBOSOMAL PROTEIN S15A. [1] ;, mRNA sequence. 80 2e-18 3
CD645891|CD645891.1 SSPG279 SS pectin Sclerotinia sclerotiorum cDNA similar to 40s ribosomal protein S22, mRNA sequence. 74 3e-15 3
AL114533|AL114533.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 60 7e-14 4
dna update 2004. 3.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P46793) RecName: Full=40S ribosomal protein S15a; AltName: Full... 261 7e-69
U27539_1(U27539|pid:none) Dictyostelium discoideum 40S ribosomal... 258 6e-68
CR940348_885(CR940348|pid:none) Theileria annulata strain Ankara... 209 2e-53
AY857473_1(AY857473|pid:none) Suberites domuncula S15a mRNA, com... 203 2e-51
EF638942_1(EF638942|pid:none) Triatoma infestans clone TI-111 40... 201 5e-51
AF159546_1(AF159546|pid:none) Lapemis hardwickii ribosomal prote... 200 2e-50
BT078894_1(BT078894|pid:none) Esox lucius clone eluc-evq-531-019... 199 3e-50
AY961547_1(AY961547|pid:none) Lysiphlebus testaceipes ribosomal ... 199 3e-50
(P62244) RecName: Full=40S ribosomal protein S15a; &(P62245) Re... 199 3e-50
AK062943_1(AK062943|pid:none) Oryza sativa Japonica Group cDNA c... 198 5e-50
protein update 2009. 7.27
PSORT

psg: 0.75 gvh: 0.50 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

84.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: nuclear

>> prediction for VSA751 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA751E
Full length Seq.
>VSA751E.Seq
CAGATACAAAATGGTCAGAATCAGTGTTTTAAACGATTGCTTAAACTCCATTGTCAATGC
CGAAAGACAAGGTAAAAGACAAGTCTTAGTCAGACCATCATCAAAAGTCATCGTTAAATT
CTTAGAAGTTATGATGAAAAAGAGATACATTGGTGAATTCGAAATCGTTGATGACCATCG
TTCCGGTAAAATTGTCATTGATTTAATCGGTCGTATCAACAAATGTGGTGTCATCTCCCC
AAGATTTGACGTTACTTTAGACGAAATCGAAAAATGGGCCTCTTACTTACTCCCATCCCG
TCAATTCGGTCATATCGTCCTCACCACCTCCCTCGGTATCATGGACCACAACGAAGCCAA
AACCAGACACACTGGTGGTAAATTATTAGGTTTCTTCTATTAAATTGCTAGTCTTTTTTA
AATAAAATTAAAATATTATTTAAATCCTTTAAAAAAAAAAAAAAAAACAAAAAAACAA
Length of full length seq. 478