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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSA716
Library VS
(Link to library)
Clone ID VSA716
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16430-1
Original site URL
Representative seq. ID VSA716E
(Link to Original site)
Representative DNA sequence 
>VSA716 (VSA716Q) /CSM/VS/VSA7-A/VSA716Q.Seq.d/
CTCGTCTTGCCAACTCACCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACA
TGGAACGTATCATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCAT
CAAAGAAAACTTTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAG
CCGCCGAAAAAAGTAAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTCTCT
TAACTTCAGGTTTCTCATTAGATGAACCATCATCATTTGCTTCACGTATTCATCGTATGA
TTAAATTAGGTTTAAGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCAACAAACA
CAACAACCAGTGATGATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAATGGAAA
AAGTCGACTAGATTTAATTACTAGCCCTTTTGCTATCAATTTTTTGGAATATTGTTATAT
TATTATAATAAAATAAATTTTAAAAAAAATCTTCAAATATAT
sequence update 2000. 2.28
Translated Amino Acid sequence 
RLANSPCVLVTSEYGWSANMERIMKAQALRDSSMSSYMSSKKTLELNPDHPIVRDLAKKA
AEKSKTFKDFVYLLYETALLTSGFSLDEPSSFASRIHRMIKLGLSIQDDSSATTEESTNT
TTSDDIPPLEENDEPSEMEKVD*i*llalllsifwnivill**nkf*kkssni
Translated Amino Acid sequence (All Frames) 
Frame A:
lvlpthhvf*lplnmvgqqtwnvs*klklsvtlqchhtchqrkl*n*iqitqslei*pkk
ppkkvklsktlftyymklls*lqvsh*mnhhhllhvfiv*ln*v*afkmihqqqlknqqt
qqpvmifhh*kktmnhlkwkkstrfny*pfcyqffgillyyynkinfkknlqiy


Frame B:
sscqltmcfsyl*iwlvskhgtyhessssp*lfnviihvikenfriksrspnr*rfsqks
rrkk*nfqrlcllii*ncslnfrflir*tiiicftyssyd*irfkhsr*fisnn*rinkh
nnq**ystirrkr*ti*ngksrldlitspfainfleycyiiiik*ilkkifky


Frame C:
RLANSPCVLVTSEYGWSANMERIMKAQALRDSSMSSYMSSKKTLELNPDHPIVRDLAKKA
AEKSKTFKDFVYLLYETALLTSGFSLDEPSSFASRIHRMIKLGLSIQDDSSATTEESTNT
TTSDDIPPLEENDEPSEMEKVD*i*llalllsifwnivill**nkf*kkssni
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA716 (VSA716Q) /CSM/VS/VSA7-A/VSA716Q.Seq.d/                        601   e-171
VHP779 (VHP779Q) /CSM/VH/VHP7-D/VHP779Q.Seq.d/                        601   e-171
VHP202 (VHP202Q) /CSM/VH/VHP2-A/VHP202Q.Seq.d/                        601   e-171
VHO658 (VHO658Q) /CSM/VH/VHO6-C/VHO658Q.Seq.d/                        601   e-171
VHO403 (VHO403Q) /CSM/VH/VHO4-A/VHO403Q.Seq.d/                        601   e-171
VHI607 (VHI607Q) /CSM/VH/VHI6-A/VHI607Q.Seq.d/                        601   e-171
VHI392 (VHI392Q) /CSM/VH/VHI3-D/VHI392Q.Seq.d/                        601   e-171
VHH869 (VHH869Q) /CSM/VH/VHH8-C/VHH869Q.Seq.d/                        601   e-171
VHH720 (VHH720Q) /CSM/VH/VHH7-A/VHH720Q.Seq.d/                        601   e-171
VHH524 (VHH524Q) /CSM/VH/VHH5-A/VHH524Q.Seq.d/                        601   e-171
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L43591|L43591.1 Dictyostelium discoideum (clone C 6.1.1) heat shock cognate protein (hsc90) mRNA, complete cds.   492   0.0    2
AY122634|AY122634.1 Naegleria gruberi strain ATCC 30224 heat shock protein 90 (HSP-90) gene, partial cds.    82   2e-15  2
AL114542|AL114542.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   4e-14  1
AL112228|AL112228.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   4e-14  1
AL111406|AL111406.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   4e-14  1
AL113572|AL113572.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   4e-14  1
AL116357|AL116357.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   4e-14  1
AL113025|AL113025.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   4e-14  1
AL110635|AL110635.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   4e-14  1
AL115365|AL115365.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   4e-14  1
dna update 2004. 3.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54651) RecName: Full=Heat shock cognate 90 kDa protein;             219   4e-56
L43591_1(L43591|pid:none) Dictyostelium discoideum (clone C 6.1....   219   4e-56
AB267894_1(AB267894|pid:none) Prymnesium parvum mRNA for heat sh...   154   1e-36
AY292370_1(AY292370|pid:none) Toxoplasma gondii HSP90 mRNA, comp...   152   6e-36
DQ884433_1(DQ884433|pid:none) Karlodinium micrum clone Kmi-5p-cD...   151   8e-36
AF402101_1(AF402101|pid:none) Achlya ambisexualis isolate JS855 ...   148   7e-35
AF402100_1(AF402100|pid:none) Achlya ambisexualis isolate JS854 ...   148   7e-35
AB092411_1(AB092411|pid:none) Entamoeba histolytica gene for cyt...   148   9e-35
AY831450_1(AY831450|pid:none) Monocercomonoides sp. PA203 heat s...   147   2e-34
AF078070_1(AF078070|pid:none) Griffithsia japonica heat-shock pr...   146   3e-34
protein update 2009. 7.27
PSORT 

 psg: 0.88  gvh: 0.46  alm: 0.41  top: 0.40  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSA716 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA716E
Full length Seq. 
>VSA716E.Seq
CTCGTCTTGCCAACTCACCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACA
TGGAACGTATCATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCAT
CAAAGAAAACTTTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAG
CCGCCGAAAAAAGTAAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTCTCT
TAACTTCAGGTTTCTCATTAGATGAACCATCATCATTTGCTTCACGTATTCATCGTATGA
TTAAATTAGGTTTAAGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCAACAAACA
CAACAACCAGTGATGATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAATGGAAA
AAGTCGACTAGATTTAATTACTAGCCCTTTTGCTATCAATTTTTTGGAATATTGTTATAT
TATTATAATAAAATAAATTTTAAAAAAAATCTTCAAATATAT
Length of full length seq. 522