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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA154
Library AH
(Link to library)
Clone ID AHA154
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID AHA154P
(Link to Original site)
Representative DNA sequence 
>AHA154 (AHA154Q) /CSM/AH/AHA1-C/AHA154Q.Seq.d/
AAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTTATAA
AAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAAAA
TAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACAC
CAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCAT
ATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAA
ATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAAC
CATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATA
CTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATT
TGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATT
TAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTG
TTGXXXXXXXXXXGTNTTATCACAGTTTNTGGTAAGAATTTATTGACAAGTGACAAAGAA
TTCAAAGTTAATGTAAAATCAAATAATAAAAATACCACAGTATTTGCTCAAGATGAAAAG
ATATTAATAGTTAGAGATGAAAGTAGAGAGAGTTCACTCTTTGTTACAACATTCATTGGA
GTTCGTTCAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATTCCA
ACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACA
GATATTCTCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTA
GAATGTAGTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAATATT
ACAAATAGTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCA
GGAGTATTATATCTCCTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAAGAA
ATTAAATTATCTCCATCACCAAACGTTAGTCAAAGAGATGTTGAAACTAAATCATCCAAA
CCATCAAATGGTTTAATAATAGGTTCTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATC
GGTGCTCTTGCCTATTACTTTAAAATACCTTTTCGTGNAAAAAATTTATAGGTAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNPPTP
IDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHSDEP
FSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITGSYL
RLFGGPNFLINSIDVNKPFV---

---XITVXGKNLLTSDKEFKVNVKSNNKNTTVFAQDEKILIVRDESRESSLFVTTFIGVR
SGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDILNASLTVSSETVPLSCNLEC
SLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYLLFNSTSFQYNVTIEEIK
LSPSPNVSQRDVETKSSKPSNGLIIGSTIGSVGGALAIGALAYYFKIPFRXKNL*vk
Translated Amino Acid sequence (All Frames) 
Frame A:
k*klnfpkiikflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*ilqh
q*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiqmn
hsqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki*sllahi
*dylvvlislliplm*inlll---

---vlsqfxvriy*qvtknsklm*nqiikipqyllkmkry**lemkvervhsllqhslef
vqdqvqh*pi*nq*fqkfqplkiklkkvf*q*fvvivlqifsmqa*qfhqklflfhvi*n
vvyhqmkylmiviqvklilqivilivyhaipvqv*kihqeyyisyltqhhfnimsqlkkl
nylhhqtlvkemlklnhpnhqmv***vlqlvvlvvlllsvllpitlkylfvxkiyr*k

Frame B:
nkn*iflk*lnfsfliffykny*kakfkikkiidkngkennitdfifvlyirifnessnt
nrcni***iiyinf***spifypfnfv*krkrtqn*ngtklfqlfss*wretlfipfr*t
ilkimg*yrq*gmc*r*ikyc*glyi*cfgfsilsksiqfei**ktkniw*ryshywlif
kiiwws*fpy*fh*ck*tfc---

---xyhsxw*efidk*qriqs*ckik**kyhsicsr*kdins*r*k*reftlcynihwss
frtkynidlyktndfrnsnh*k*n*kryfsnnswl*fyrysqcklnsfirncssfm*frm
*fitk*nt****fk*n*yyk**y*lfimpfrfkcekyirsiispi*lniisi*chn*rn*
iisitkr*skrc*n*iiqtikwfnnrfynw*cwwcscyrcsclll*ntfsxkkfigkk

Frame C:
ikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNPPTP
IDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHSDEP
FSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITGSYL
RLFGGPNFLINSIDVNKPFV---

---XITVXGKNLLTSDKEFKVNVKSNNKNTTVFAQDEKILIVRDESRESSLFVTTFIGVR
SGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDILNASLTVSSETVPLSCNLEC
SLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYLLFNSTSFQYNVTIEEIK
LSPSPNVSQRDVETKSSKPSNGLIIGSTIGSVGGALAIGALAYYFKIPFRXKNL*vk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA154 (AHA154Q) /CSM/AH/AHA1-C/AHA154Q.Seq.d/                       1538   0.0
SHD571 (SHD571Q) /CSM/SH/SHD5-C/SHD571Q.Seq.d/                       1382   0.0
CHG218 (CHG218Q) /CSM/CH/CHG2-A/CHG218Q.Seq.d/                       1382   0.0
AHO612 (AHO612Q) /CSM/AH/AHO6-A/AHO612Q.Seq.d/                       1382   0.0
AHM883 (AHM883Q) /CSM/AH/AHM8-D/AHM883Q.Seq.d/                       1382   0.0
AHL692 (AHL692Q) /CSM/AH/AHL6-D/AHL692Q.Seq.d/                       1382   0.0
AHL221 (AHL221Q) /CSM/AH/AHL2-A/AHL221Q.Seq.d/                       1382   0.0
AHK465 (AHK465Q) /CSM/AH/AHK4-C/AHK465Q.Seq.d/                       1382   0.0
AHK212 (AHK212Q) /CSM/AH/AHK2-A/AHK212Q.Seq.d/                       1382   0.0
AHH174 (AHH174Q) /CSM/AH/AHH1-D/AHH174Q.Seq.d/                       1382   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.  1344   0.0    2
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.  1344   0.0    5
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.    80   5e-41  7
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    36   9e-07  16
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    32   2e-05  14
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   3e-05  23
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   4e-05  19
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    40   6e-05  16
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    46   6e-05  17
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    60   9e-05  16
dna update 2004. 2.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli...   378   e-103
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   369   e-100
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   369   e-100
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...   369   e-100
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   369   e-100
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...   368   e-100
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS...   365   1e-99
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS...   353   7e-96
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...   353   7e-96
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...   353   7e-96
protein update 2009. 4.26
PSORT 

 psg: 1.02  gvh: 0.77  alm: 0.34  top: 0.07  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  8.0 %: nuclear
	  4.0 %: mitochondrial

>> prediction for AHA154 is exc
5' end seq. ID AHA154F
5' end seq. 
>AHA154F.Seq
AAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTTATAA
AAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAAAA
TAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACAC
CAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCAT
ATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAA
ATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAAC
CATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATA
CTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATT
TGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATT
TAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTG
TTGNNNNNNNNNN
Length of 5' end seq. 613
3' end seq. ID AHA154Z
3' end seq. 
>AHA154Z.Seq
NNNNNNNNNNGTNTTATCACAGTTTNTGGTAAGAATTTATTGACAAGTGACAAAGAATTC
AAAGTTAATGTAAAATCAAATAATAAAAATACCACAGTATTTGCTCAAGATGAAAAGATA
TTAATAGTTAGAGATGAAAGTAGAGAGAGTTCACTCTTTGTTACAACATTCATTGGAGTT
CGTTCAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACC
ATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGAT
ATTCTCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAA
TGTAGTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACA
AATAGTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGA
GTATTATATCTCCTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATT
AAATTATCTCCATCACCAAACGTTAGTCAAAGAGATGTTGAAACTAAATCATCCAAACCA
TCAAATGGTTTAATAATAGGTTCTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGT
GCTCTTGCCTATTACTTTAAAATACCTTTTCGTGNAAAAAATTTATAGGTAAAAAA
Length of 3' end seq. 716
Connected seq. ID AHA154P
Connected seq. 
>AHA154P.Seq
AAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTTATAA
AAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAAAA
TAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACAC
CAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCAT
ATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAA
ATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAAC
CATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATA
CTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATT
TGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATT
TAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTG
TTG----------GTNTTATCACAGTTTNTGGTAAGAATTTATTGACAAGTGACAAAGAA
TTCAAAGTTAATGTAAAATCAAATAATAAAAATACCACAGTATTTGCTCAAGATGAAAAG
ATATTAATAGTTAGAGATGAAAGTAGAGAGAGTTCACTCTTTGTTACAACATTCATTGGA
GTTCGTTCAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATTCCA
ACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACA
GATATTCTCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTA
GAATGTAGTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAATATT
ACAAATAGTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCA
GGAGTATTATATCTCCTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAAGAA
ATTAAATTATCTCCATCACCAAACGTTAGTCAAAGAGATGTTGAAACTAAATCATCCAAA
CCATCAAATGGTTTAATAATAGGTTCTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATC
GGTGCTCTTGCCTATTACTTTAAAATACCTTTTCGTGNAAAAAATTTATAGGTAAAAAA
Length of connected seq. 1309
Full length Seq ID -
Full length Seq. -
Length of full length seq. -