>VSA678 (VSA678Q) /CSM/VS/VSA6-D/VSA678Q.Seq.d/
CGGACGCGTGGGTAATTAAATAAATAAAAAAGAAAAATAAAATGAGTTTTCTTAAAATTA
ATAAAATAGCATTAAAATCATCAACAAACATCGATAATCATCACCTTTCAAAATTAACTT
CCAATTGGATTAAACAAGCAAAAGAAAGAGATCAATTAGAAAATATTTCAAAATTATTAG
AGTTAAAATTGGAATTAATTCATAAACAACAACAACAAATTAAAGAGGAACAACAAAAAT
AAATAAATAAATAAATAAATAAATAAAAAAAAATAAAAAAAAAATAAA

dawvik*IKKKNKMSFLKINKIALKSSTNIDNHHLSKLTSNWIKQAKERDQLENISKLLE
LKLELIHKQQQQIKEEQQK*ink*ink*kkikkk*

Frame A:
rtrg*lnk*krkik*vflklik*h*nhqqtsiiitfqn*lpiglnkqkkein*kifqny*
s*nwn*finnnnklkrnnknk*ink*inkkk*kknk


Frame B:
grvgn*inkkek*nefs*n**nsikiinkhr*sspfkinfqld*tskrkrsirkyfkiir
vkigins*ttttn*rgttkink*ink*ikknkkki


Frame C:
dawvik*IKKKNKMSFLKINKIALKSSTNIDNHHLSKLTSNWIKQAKERDQLENISKLLE
LKLELIHKQQQQIKEEQQK*ink*ink*kkikkk*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA678 (VSA678Q) /CSM/VS/VSA6-D/VSA678Q.Seq.d/                        297   5e-80
VSC108 (VSC108Q) /CSM/VS/VSC1-A/VSC108Q.Seq.d/                        236   1e-61
VFG322 (VFG322Q) /CSM/VF/VFG3-A/VFG322Q.Seq.d/                        236   1e-61
AFE731 (AFE731Q) /CSM/AF/AFE7-B/AFE731Q.Seq.d/                        236   1e-61
SSJ191 (SSJ191Q) /CSM/SS/SSJ1-D/SSJ191Q.Seq.d/                         38   0.070
VSH240 (VSH240Q) /CSM/VS/VSH2-B/VSH240Q.Seq.d/                         36   0.28
VSB580 (VSB580Q) /CSM/VS/VSB5-D/VSB580Q.Seq.d/                         36   0.28
VSA376 (VSA376Q) /CSM/VS/VSA3-D/VSA376Q.Seq.d/                         36   0.28
VHP275 (VHP275Q) /CSM/VH/VHP2-D/VHP275Q.Seq.d/                         36   0.28
VFI719 (VFI719Q) /CSM/VF/VFI7-A/VFI719Q.Seq.d/                         36   0.28

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB031194|AB031194.1 Cordyceps konnoana mitochondrial gene for small subunit rRNA, partial sequence.    58  6e-05  1
AL391258|AL391258.10 Human DNA sequence from clone RP11-156A19 on chromosome 1q31.1-31.3.    38  0.15  3
AY054799|AY054799.1 Plasmodium falciparum isolate AN20 isolate AN143 erythrocyte membrane protein 1 (var) gene, partial cds.    46  0.23  1
AL031010|AL031010.1 Human DNA sequence from clone 422F24 on chromosome 6q24.1-25.2. Contains a novel gene similar to C. elegans C02C2.5. Contains ESTs, STSs and GSSs.    46  0.23  1
AL808021|AL808021.12 Mouse DNA sequence from clone RP23-349B15 on chromosome 11.    44  0.90  1
BZ636431|BZ636431.1 OGCCV30TM ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0143E12, DNA sequence.    36  1.0  2
AC129623|AC129623.4 Homo sapiens 12 BAC CTD-2107C6 (Cal Tech Human BAC Library D) complete sequence.    34  1.1  5
BZ636424|BZ636424.1 OGCCV30TC ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0143E12, DNA sequence.    36  1.1  2
AA550698|AA550698.1 1935m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1935m, mRNA sequence.    36  1.2  2
AC021146|AC021146.7 Homo sapiens BAC clone RP11-468N14 from 4, complete sequence.    42  1.2  4

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 195,277,291

 psg: 0.64  gvh: 0.29  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 16.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSA678 is nuc

>VSA678E.Seq
CGGACGCGTGGGTAATTAAATAAATAAAAAAGAAAAATAAAATGAGTTTTCTTAAAATTA
ATAAAATAGCATTAAAATCATCAACAAACATCGATAATCATCACCTTTCAAAATTAACTT
CCAATTGGATTAAACAAGCAAAAGAAAGAGATCAATTAGAAAATATTTCAAAATTATTAG
AGTTAAAATTGGAATTAATTCATAAACAACAACAACAAATTAAAGAGGAACAACAAAAAT
AAATAAATAAATAAATAAATAAATAAAAAAAAATAAAAAAAAAATAAA