>VSA677 (VSA677Q) /CSM/VS/VSA6-D/VSA677Q.Seq.d/
AATAATAAAAATAAAAATAAATTTATTTAAAAATGCCATTAAAATTAGATAATGAATCAG
AGTTACGTGAAGCTCAAGCCGCTTTATTCAATATAAATTCTACCGGTGGTTGGGTTATGT
TGAATTATGTCGGTCCTTCAACTGTTCATTTCGCTGCTGGCGGAGAAAATTTTGAAGAAA
TTGTTAATCTTCTTGAGGATGATCAAATCCAATATGGTGTTCTTAGAATTGGTAATATTG
AAGAGAAAGGTACTTTGAAAACCACAGTTAGAGATGTTTTCTTTTGTTGGATTGGTCCAG
GTGTTGGAATCATCGAAAAAGGTAAAAAGACCGCTTTTTTAGGTGATGCTCAACAGTTAC
TTCAACCATACCATGCTGATATCACAGTACTTAAT

**k*k*IYLKMPLKLDNESELREAQAALFNINSTGGWVMLNYVGPSTVHFAAGGENFEEI
VNLLEDDQIQYGVLRIGNIEEKGTLKTTVRDVFFCWIGPGVGIIEKGKKTAFLGDAQQLL
QPYHADITVLN

Frame A:
nnknknkfi*kch*n*imnqsyvklkplysi*ilpvvglc*imsvlqlfisllaekilkk
lliflrmiksnmvflelvilkrkvl*kpqlemfsfvglvqvlesskkvkrplf*vmlnsy
fnhtmlisqyl


Frame B:
iikikinlfknaikir**irvt*sssrfiqykfyrwlgyvelcrsfncsfrcwrrkf*rn
c*ss*g*snpiwcs*nw*y*reryfenhs*rcfllldwsrcwnhrkr*kdrffr*cstvt
stipc*yhst*


Frame C:
**k*k*IYLKMPLKLDNESELREAQAALFNINSTGGWVMLNYVGPSTVHFAAGGENFEEI
VNLLEDDQIQYGVLRIGNIEEKGTLKTTVRDVFFCWIGPGVGIIEKGKKTAFLGDAQQLL
QPYHADITVLN

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ767 (VSJ767Q) /CSM/VS/VSJ7-C/VSJ767Q.Seq.d/                        694   0.0
VSJ749 (VSJ749Q) /CSM/VS/VSJ7-C/VSJ749Q.Seq.d/                        694   0.0
VSJ439 (VSJ439Q) /CSM/VS/VSJ4-B/VSJ439Q.Seq.d/                        694   0.0
VSI825 (VSI825Q) /CSM/VS/VSI8-B/VSI825Q.Seq.d/                        694   0.0
VSG623 (VSG623Q) /CSM/VS/VSG6-A/VSG623Q.Seq.d/                        694   0.0
VSG522 (VSG522Q) /CSM/VS/VSG5-A/VSG522Q.Seq.d/                        694   0.0
VSF459 (VSF459Q) /CSM/VS/VSF4-C/VSF459Q.Seq.d/                        694   0.0
VSF325 (VSF325Q) /CSM/VS/VSF3-B/VSF325Q.Seq.d/                        694   0.0
VSC723 (VSC723Q) /CSM/VS/VSC7-A/VSC723Q.Seq.d/                        694   0.0
VSA677 (VSA677Q) /CSM/VS/VSA6-D/VSA677Q.Seq.d/                        694   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC133595|AC133595.14 Homo sapiens chromosome 17 clone RP11-242A8 map 17, 3 unordered pieces.    44  1.3  1
AC140470|AC140470.1 Mus musculus chromosome UNK clone RP24-396I22, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44  1.3  1
AZ408642|AZ408642.1 1M0179J20R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0179J20 R, DNA sequence.    44  1.3  1
CA304055|CA304055.1 As_adfo_10H09_T3 Ascaris suum adult female ovary Ascaris suum cDNA clone As_adfo_10H09 5', mRNA sequence.    44  1.3  1
AC107145|AC107145.5 Rattus norvegicus clone CH230-106E18, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.3  1
AC136738|AC136738.3 Mus musculus clone RP23-173F22, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44  1.3  1
AC069059|AC069059.2 Homo sapiens chromosome 11 clone RP11-421F3 map 11, WORKING DRAFT SEQUENCE, 19 unordered pieces.    42  5.0  1
AY269187|AY269187.1 Homo sapiens chromosome 3 clone PAC1022H12_BAC432a18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    42  5.0  1
AC138388|AC138388.1 Mus musculus chromosome UNK clone RP23-455J6, WORKING DRAFT SEQUENCE, 18 unordered pieces.    42  5.0  1
BU544147|BU544147.1 GM880001A20D10 Gm-r1088 Glycine max cDNA clone Gm-r1088-164 3', mRNA sequence.    42  5.0  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116922_4(AC116922|pid:none) Dictyostelium discoideum chromosom...    53   4e-06
DQ443285_1(DQ443285|pid:none) Bombyx mori cyclic AMP-regulated p...    40   0.033
AY122215_1(AY122215|pid:none) Drosophila melanogaster LP08941 fu...    39   0.057
AB080297_1(AB080297|pid:none) Marsupenaeus japonicus cArp-1 mRNA...    37   0.28
CP001016_3217(CP001016|pid:none) Beijerinckia indica subsp. indi...    34   1.4
EF107689_1(EF107689|pid:none) Emericella nidulans AbpA (abpA) ge...    34   1.8
(Q44586) RecName: Full=Nickel-cobalt-cadmium resistance protein ...    34   1.8
CP001196_729(CP001196|pid:none) Oligotropha carboxidovorans OM5 ...    33   2.4
CU633901_407(CU633901|pid:none) Podospora anserina genomic DNA c...    33   2.4
U95370_2(U95370|pid:none) Bacillus licheniformis lichenysin bios...    33   2.4

 psg: 0.37  gvh: 0.42  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSA677 is nuc

>VSA677E.Seq
AATAATAAAAATAAAAATAAATTTATTTAAAAATGCCATTAAAATTAGATAATGAATCAG
AGTTACGTGAAGCTCAAGCCGCTTTATTCAATATAAATTCTACCGGTGGTTGGGTTATGT
TGAATTATGTCGGTCCTTCAACTGTTCATTTCGCTGCTGGCGGAGAAAATTTTGAAGAAA
TTGTTAATCTTCTTGAGGATGATCAAATCCAATATGGTGTTCTTAGAATTGGTAATATTG
AAGAGAAAGGTACTTTGAAAACCACAGTTAGAGATGTTTTCTTTTGTTGGATTGGTCCAG
GTGTTGGAATCATCGAAAAAGGTAAAAAGACCGCTTTTTTAGGTGATGCTCAACAGTTAC
TTCAACCATACCATGCTGATATCACAGTACTTAAT