VSA643
Library VS
(Link to library)
Clone ID VSA643
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15185-1
Original site URL
Representative seq. ID VSA643E
(Link to Original site)
Representative DNA sequence
>VSA643 (VSA643Q) /CSM/VS/VSA6-B/VSA643Q.Seq.d/
ACACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATG
GTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCT
GTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACG
GTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTG
TTAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATA
AAATAAATCAGGACCAATATACACTGGTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAAT
AAAAAAAAAAATAAAAAAAA
sequence update 2000. 2.23
Translated Amino Acid sequence
TMAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNG
CRKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknkkkkkkk*
kkk*kk


Translated Amino Acid sequence (All Frames)
Frame A:
tqwpkeqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsgnvt
vavkf*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*kikkkkkkn
kkknkk


Frame B:
hngqknkesrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtfirwylem*r
lp*sfswwcldyvncrwchc*inyqtsqrvk*lnhlymk*nksgpiytgfkk*kkkkkki
kkkikk


Frame C:
TMAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNG
CRKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknkkkkkkk*
kkk*kk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI473 (VSI473Q) /CSM/VS/VSI4-D/VSI473Q.Seq.d/ 656 0.0
VSI440 (VSI440Q) /CSM/VS/VSI4-B/VSI440Q.Seq.d/ 656 0.0
VSI243 (VSI243Q) /CSM/VS/VSI2-B/VSI243Q.Seq.d/ 656 0.0
VSH888 (VSH888Q) /CSM/VS/VSH8-D/VSH888Q.Seq.d/ 656 0.0
VSH330 (VSH330Q) /CSM/VS/VSH3-B/VSH330Q.Seq.d/ 656 0.0
VSG249 (VSG249Q) /CSM/VS/VSG2-C/VSG249Q.Seq.d/ 656 0.0
VSF596 (VSF596Q) /CSM/VS/VSF5-D/VSF596Q.Seq.d/ 656 0.0
VSF225 (VSF225Q) /CSM/VS/VSF2-B/VSF225Q.Seq.d/ 656 0.0
VSE566 (VSE566Q) /CSM/VS/VSE5-C/VSE566Q.Seq.d/ 656 0.0
VSE459 (VSE459Q) /CSM/VS/VSE4-C/VSE459Q.Seq.d/ 656 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL116011|AL116011.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 84 4e-15 2
AL116009|AL116009.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 84 4e-15 2
AL115603|AL115603.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 84 4e-15 2
AL112083|AL112083.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 84 4e-15 2
AL112069|AL112069.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 84 4e-15 2
AL111042|AL111042.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 84 5e-15 2
AL114982|AL114982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 80 1e-13 2
AL110769|AL110769.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 78 3e-13 2
BM027100|BM027100.1 GIT0000389 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence. 84 1e-12 1
BI323490|BI323490.1 kt71h07.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:R37A_OSTOS O61598 60S RIBOSOMAL PROTEIN L37A. ;, mRNA sequence. 42 7e-12 4
dna update 2003. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54UG4) RecName: Full=60S ribosomal protein L37a; &JE0321(JE03... 184 9e-46
(O61462) RecName: Full=60S ribosomal protein L37a; &AF040712_1(... 149 4e-35
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri... 148 7e-35
A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633. &C... 147 2e-34
EU125030_1(EU125030|pid:none) Eurythoe complanata ribosomal prot... 146 2e-34
(O61598) RecName: Full=60S ribosomal protein L37a; &AF052737_1(... 146 3e-34
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso... 146 3e-34
AM049130_1(AM049130|pid:none) Agriotes lineatus mRNA for ribosom... 145 3e-34
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom... 145 4e-34
AM049133_1(AM049133|pid:none) Sphaerius sp. APV-2005 mRNA for ri... 145 4e-34
protein update 2009. 7.27
PSORT

psg: 0.77 gvh: 0.34 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.41 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: mitochondrial
28.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: vacuolar
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for VSA643 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA643E
Full length Seq.
>VSA643E.Seq
ACACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATG
GTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCT
GTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACG
GTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTG
TTAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATA
AAATAAATCAGGACCAATATACACTGGTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAAT
AAAAAAAAAAATAAAAAAAA
Length of full length seq. 380