VSA637
Library VS
(Link to library)
Clone ID VSA637
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06292-1
Original site URL
Representative seq. ID VSA637Z
(Link to Original site)
Representative DNA sequence
>VSA637 (VSA637Q) /CSM/VS/VSA6-B/VSA637Q.Seq.d/
XXXXXXXXXXATCGTTGGTAATAAAGAACCATTTGTAGATATTCCAGATGAATATATTAG
AGATGCATTGGTAGATTTATTGGATGTGAGCAATCATCCAATCTTAATTCATTGCAATAA
AGGGAACCATAGAACAGGTTGTTTAGTTGGATGTTTAAGAAAACTTCTCAAATGGTCATA
CACATATATATTTGATGAATATAGAAGATTTGCTGGAAGTAAAGTAAGAGTTTTGGATCA
ACAATTTATTGAATTATTTAATTTAGAAGTACCATATAACNAGAGGTATAAACCTGATTG
GTTGACCAACTAATTTTAANAATGGAATAATAATAATAATAATAATAAANTATTTTTATN
ATTGTCATCAACATCAATTANNATAATAGTATNAAAATTGAAATGTTTCAACGAAAATTA
TNAAAATAAAAAAAAAAAAAAAAAA
sequence update 2000. 2.23
Translated Amino Acid sequence
---VGNKEPFVDIPDEYIRDALVDLLDVSNHPILIHCNKGNHRTGCLVGCLRKLLKWSYT
YIFDEYRRFAGSKVRVLDQQFIELFNLEVPYNXRYKPDWLTN*f*xwnnnnnnnkxflxl
sstsixiivxklkcfnenyxnkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---slviknhl*ifqmnilemhw*iywm*aiiqs*fiaikgtieqvv*ldv*enfsnght
hiylmniedllevk*efwinnllnyli*kyhitrginlig*ptnfxngiiiiiiixyfyx
chqhqlx**yxn*nvstkixkikkkkk


Frame B:
---rw**rticrysr*iy*rcigrfigceqssnlnslq*rep*nrlfswmfkktsqmvih
iyi**i*kicwk*sksfgstiy*ii*frsti*xev*t*lvdqlilxme*******xifxi
vininxxnsxkiemfqrklxk*kkkkk


Frame C:
---VGNKEPFVDIPDEYIRDALVDLLDVSNHPILIHCNKGNHRTGCLVGCLRKLLKWSYT
YIFDEYRRFAGSKVRVLDQQFIELFNLEVPYNXRYKPDWLTN*f*xwnnnnnnnkxflxl
sstsixiivxklkcfnenyxnkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSA637 (VSA637Q) /CSM/VS/VSA6-B/VSA637Q.Seq.d/ 613 e-174
SSG293 (SSG293Q) /CSM/SS/SSG2-D/SSG293Q.Seq.d/ 46 4e-04
VHP165 (VHP165Q) /CSM/VH/VHP1-C/VHP165Q.Seq.d/ 38 0.11
SHG562 (SHG562Q) /CSM/SH/SHG5-C/SHG562Q.Seq.d/ 38 0.11
CHS486 (CHS486Q) /CSM/CH/CHS4-D/CHS486Q.Seq.d/ 38 0.11
AFD672 (AFD672Q) /CSM/AF/AFD6-C/AFD672Q.Seq.d/ 38 0.11
VFF370 (VFF370Q) /CSM/VF/VFF3-C/VFF370Q.Seq.d/ 36 0.43
SSA122 (SSA122Q) /CSM/SS/SSA1-A/SSA122Q.Seq.d/ 36 0.43
SLI660 (SLI660Q) /CSM/SL/SLI6-C/SLI660Q.Seq.d/ 36 0.43
SHC642 (SHC642Q) /CSM/SH/SHC6-B/SHC642Q.Seq.d/ 36 0.43

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL427528|AL427528.1 clone BA0AB019G08 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 46 5e-07 2
AL408450|AL408450.1 T3 end of clone AV0AA008F02 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 44 0.006 2
AF366443|AF366443.1 Allium cepa clone AGF096 maintainer line sequence. 48 0.092 1
AQ947371|AQ947371.1 Sheared DNA-49I15.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-49I15, genomic survey sequence. 48 0.092 1
BE205607|BE205607.1 API96 NPI Onion cDNA library Allium cepa cDNA clone API96, mRNA sequence. 48 0.092 1
BH007388|BH007388.1 ee66g02.x1 TO1000 Brassica oleracea genomic clone ee66g02 5', DNA sequence. 48 0.092 1
BI977733|BI977733.1 lC02 Old Blush petal SMART library Rosa chinensis cDNA 5' similar to unknown protein (T7A14.14), mRNA sequence. 46 0.36 1
AC022358|AC022358.2 Homo sapiens chromosome 11 clone RP11-682J19 map 11, WORKING DRAFT SEQUENCE, 15 unordered pieces. 46 0.36 1
BI978917|BI978917.1 yF10 Old Blush petal SMART library Rosa chinensis cDNA 5' similar to calmodulin, mRNA sequence. 46 0.36 1
AL928611|AL928611.9 Mouse DNA sequence from clone RP23-263O5 on chromosome 2. 38 1.1 6
dna update 2003. 8.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017347_293(AE017347|pid:none) Cryptococcus neoformans var. neo... 123 2e-27
AE016817_197(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 122 4e-27
AF458342_1(AF458342|pid:none) Arabidopsis thaliana AT4g03960/T24... 121 9e-27
(P53965) RecName: Full=Tyrosine-protein phosphatase SIW14; ... 120 1e-26
BT033696_1(BT033696|pid:none) Zea mays full-length cDNA clone ZM... 120 2e-26
AP008212_579(AP008212|pid:none) Oryza sativa (japonica cultivar-... 120 2e-26
AY669072_1(AY669072|pid:none) Oryza sativa dual-specificity phos... 120 2e-26
FN392320_1123(FN392320|pid:none) Pichia pastoris GS115 chromosom... 119 3e-26
EU972079_1(EU972079|pid:none) Zea mays clone 374537 tyrosine spe... 119 3e-26
CR380959_294(CR380959|pid:none) Candida glabrata strain CBS138 c... 119 3e-26
protein update 2009. 7.27
PSORT

psg: 0.75 gvh: 0.44 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VSA637 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSA637Z
3' end seq.
>VSA637Z.Seq
----------ATCGTTGGTAATAAAGAACCATTTGTAGATATTCCAGATGAATATATTAG
AGATGCATTGGTAGATTTATTGGATGTGAGCAATCATCCAATCTTAATTCATTGCAATAA
AGGGAACCATAGAACAGGTTGTTTAGTTGGATGTTTAAGAAAACTTCTCAAATGGTCATA
CACATATATATTTGATGAATATAGAAGATTTGCTGGAAGTAAAGTAAGAGTTTTGGATCA
ACAATTTATTGAATTATTTAATTTAGAAGTACCATATAACNAGAGGTATAAACCTGATTG
GTTGACCAACTAATTTTAANAATGGAATAATAATAATAATAATAATAAANTATTTTTATN
ATTGTCATCAACATCAATTANNATAATAGTATNAAAATTGAAATGTTTCAACGAAAATTA
TNAAAATAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 435
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -