>AHA147 (AHA147Q) /CSM/AH/AHA1-B/AHA147Q.Seq.d/
XXXXXXXXXXATGGCTTTACCAGATAAAATTTCCTCACCATACATTCAAACNTTGGAGAA
TTCAAGTGAATCACCAGTGTTGGTAGATCTTAGTTCCGATCATAGATTCAATGAAAAATG
GACCTATGGTCAACCAGAAACCAATCGTGCAGCAATTAAAGAATCCAAATTAATCGCCAA
TCCAGGTTGTTATGCAACTGGTATGTTTTTAACATTGAAGCCATTTGTCAATGATTTAGT
AACACCACCATCTTGTTTTGGTATTTCAGGTTATTCCGGTGCTGGTAGTAAACCATCTGA
AAAGAATGATCCAACACGTCTAAGTGATAATATCTTACCTTACAAATTGGTTCAACATAC
TCATGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATCTATTTCATGCCACATGTTGG
TCAATTCTTTCAAGGTATTACCCTTACAATCTCAATGGAACTCAAATATCCAATGACCAA
AGAACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAATGAACCGTTAATTAAAATCGA
TAAAGATGGTATTCCAGAGGTTAAATCAAATAGTGGTNAA

---ALPDKISSPYIQTLENSSESPVLVDLSSDHRFNEKWTYGQPETNRAAIKESKLIANP
GCYATGMFLTLKPFVNDLVTPPSCFGISGYSGAGSKPSEKNDPTRLSDNILPYKLVQHTH
ELEVSHQLGSPIYFMPHVGQFFQGITLTISMELKYPMTKEQVVERYQKFYQNEPLIKIDK
DGIPEVKSNSGX

Frame A:
---wlyqikfphhtfkxwriqvnhqcw*ilvpiidsmkngpmvnqkpivqqlknpn*spi
qvvmqlvcf*h*shlsmi**hhhlvlvfqvipvlvvnhlkrmiqhv*viisyltnwfnil
mnlrlvinwvvqsischmlvnsfkvlplqsqwnsniq*pknkwsnviknsikmnr*lksi
kmvfqrlnqivv


Frame B:
---gftr*nfltihsnxgefk*itsvgrs*frs*iq*kmdlwstrnqscsn*riqinrqs
rllcnwyvfnieaicq*fsnttilfwyfrlfrcw**ti*ke*sntsk**yltlqigstys
*t*g*ssig*snlfhatcwsilsryypynlngtqisndqrtsgrtlskilsk*tvn*nr*
rwysrg*ik*wx


Frame C:
---ALPDKISSPYIQTLENSSESPVLVDLSSDHRFNEKWTYGQPETNRAAIKESKLIANP
GCYATGMFLTLKPFVNDLVTPPSCFGISGYSGAGSKPSEKNDPTRLSDNILPYKLVQHTH
ELEVSHQLGSPIYFMPHVGQFFQGITLTISMELKYPMTKEQVVERYQKFYQNEPLIKIDK
DGIPEVKSNSGX

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC503 (VHC503Q) /CSM/VH/VHC5-A/VHC503Q.Seq.d/                       1118   0.0
AHE324 (AHE324Q) /CSM/AH/AHE3-A/AHE324Q.Seq.d/                       1118   0.0
AHC276 (AHC276Q) /CSM/AH/AHC2-D/AHC276Q.Seq.d/                       1118   0.0
AHA147 (AHA147Q) /CSM/AH/AHA1-B/AHA147Q.Seq.d/                       1118   0.0
AHD523 (AHD523Q) /CSM/AH/AHD5-A/AHD523Q.Seq.d/                       1116   0.0
AHN867 (AHN867Q) /CSM/AH/AHN8-C/AHN867Q.Seq.d/                       1114   0.0
SHB811 (SHB811Q) /CSM/SH/SHB8-A/SHB811Q.Seq.d/                       1108   0.0
AHI491 (AHI491Q) /CSM/AH/AHI4-D/AHI491Q.Seq.d/                       1108   0.0
AHA286 (AHA286Q) /CSM/AH/AHA2-D/AHA286Q.Seq.d/                       1106   0.0
AHH231 (AHH231Q) /CSM/AH/AHH2-B/AHH231Q.Seq.d/                       1104   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL425928|AL425928.1 clone BA0AB008G09 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    60   3e-05  1
AC138190|AC138190.1 Mus musculus clone RP23-224G5, LOW-PASS SEQUENCE SAMPLING.    36   0.60   4
AC120816|AC120816.4 Rattus norvegicus clone CH230-347G6, WORKING DRAFT SEQUENCE, 4 unordered pieces.    38   1.2    7
AC108850|AC108850.2 Mus musculus clone RP24-85N11, WORKING DRAFT SEQUENCE, 7 unordered pieces.    44   2.1    1
AC107834|AC107834.5 Mus musculus clone RP23-251L12, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44   2.1    1
AC100895|AC100895.2 Mus musculus clone RP23-69G5, LOW-PASS SEQUENCE SAMPLING.    44   2.1    1
AC125310|AC125310.2 Mus musculus chromosome UNK clone RP24-548E5, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44   2.1    1
AC100561|AC100561.6 Mus musculus chromosome 1 clone RP23-154C4 map 1, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    44   2.1    1
AC107800|AC107800.4 Mus musculus clone RP23-28K16, WORKING DRAFT SEQUENCE, 14 unordered pieces.    44   2.1    1
BZ235549|BZ235549.1 CH230-251O21.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-251O21, DNA sequence.    40   3.0    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013598_2615(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K...   200   3e-50
CP000967_1954(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P...   197   2e-49
AP008229_2516(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M...   197   2e-49
AM039952_2545(AM039952|pid:none) Xanthomonas campestris pv. vesi...   197   2e-49
AM920689_1961(AM920689|pid:none) Xanthomonas campestris pv. camp...   191   2e-47
AM743169_3114(AM743169|pid:none) Stenotrophomonas maltophilia K2...   190   2e-47
(Q4UVI5) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   189   3e-47
CP001111_2719(CP001111|pid:none) Stenotrophomonas maltophilia R5...   189   4e-47
CP000941_285(CP000941|pid:none) Xylella fastidiosa M12, complete...   182   5e-45
(Q01217) RecName: Full=Protein ARG5,6, mitochondrial; Contains: ...   181   2e-44

 psg: 0.79  gvh: 0.33  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for AHA147 is cyt

>AHA147Z.Seq
NNNNNNNNNNATGGCTTTACCAGATAAAATTTCCTCACCATACATTCAAACNTTGGAGAA
TTCAAGTGAATCACCAGTGTTGGTAGATCTTAGTTCCGATCATAGATTCAATGAAAAATG
GACCTATGGTCAACCAGAAACCAATCGTGCAGCAATTAAAGAATCCAAATTAATCGCCAA
TCCAGGTTGTTATGCAACTGGTATGTTTTTAACATTGAAGCCATTTGTCAATGATTTAGT
AACACCACCATCTTGTTTTGGTATTTCAGGTTATTCCGGTGCTGGTAGTAAACCATCTGA
AAAGAATGATCCAACACGTCTAAGTGATAATATCTTACCTTACAAATTGGTTCAACATAC
TCATGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATCTATTTCATGCCACATGTTGG
TCAATTCTTTCAAGGTATTACCCTTACAATCTCAATGGAACTCAAATATCCAATGACCAA
AGAACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAATGAACCGTTAATTAAAATCGA
TAAAGATGGTATTCCAGAGGTTAAATCAAATAGTGGTNAA