>AHA146 (AHA146Q) /CSM/AH/AHA1-B/AHA146Q.Seq.d/
XXXXXXXXXXCCCAAGAGGTTGTAAATCATTTGGTGGTTCATTCTGTATTCCAGGTGAAT
ATTCAGCTTGGTCAAGTGTTTATTTCGAATCACAACCTTGGATTTCAGATTTAACAATGG
ATGGTGAAGATATGATAATTTCAATTCGTGATCGTGGTGGTGATTTAGATCGTGATGTTG
GTACCTATGATATGTTAAGAGCTTGCTTTGATGGTGATCAATTAATACTTGAGAATAGTG
GAATTTGTGGAGGTGTTCCTGGTGCTCATCTATTACCTTCTGGTTATTTCGGTACACCTG
ACGGTATCAATAGTGGTGAATATTACAATGATAATTTCTATTATCCAACTGATAATGATG
GTCATGATAATGTAGCTTCGACTTCTGGTGTTGTAATTCCAGGTTATCATACTCTCTTTG
GTTCTTCATTAGATATCGATAGTGTTGGACAAGG

---PRGCKSFGGSFCIPGEYSAWSSVYFESQPWISDLTMDGEDMIISIRDRGGDLDRDVG
TYDMLRACFDGDQLILENSGICGGVPGAHLLPSGYFGTPDGINSGEYYNDNFYYPTDNDG
HDNVASTSGVVIPGYHTLFGSSLDIDSVGQ

Frame A:
---PRGCKSFGGSFCIPGEYSAWSSVYFESQPWISDLTMDGEDMIISIRDRGGDLDRDVG
TYDMLRACFDGDQLILENSGICGGVPGAHLLPSGYFGTPDGINSGEYYNDNFYYPTDNDG
HDNVASTSGVVIPGYHTLFGSSLDIDSVGQ


Frame B:
---qevvnhlvvhsvfqvniqlgqvfisnhnlgfqi*qwmvki**fqfvivvvi*ivmlv
pmic*elalmvin*ylrivefvevflvliyyllvisvhltvsivvnitmiisiiqlimmv
mim*lrllvl*fqviilslvlh*isivldk


Frame C:
---krl*iiwwfilysr*ifslvkclfrittldfrfnngw*rydnfns*sww*frs*cwy
l*yvksll*w*sint*e*wnlwrcswcssitfwlfryt*ryq*w*ilq**fllsn***ws
**csfdfwccnsrlsyslwffiryr*cwtr

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHO144 (AHO144Q) /CSM/AH/AHO1-B/AHO144Q.Seq.d/                        880   0.0
AHE155 (AHE155Q) /CSM/AH/AHE1-C/AHE155Q.Seq.d/                        880   0.0
AHA605 (AHA605Q) /CSM/AH/AHA6-A/AHA605Q.Seq.d/                        880   0.0
AHA146 (AHA146Q) /CSM/AH/AHA1-B/AHA146Q.Seq.d/                        880   0.0
AHL377 (AHL377Q) /CSM/AH/AHL3-D/AHL377Q.Seq.d/                        868   0.0
AHA618 (AHA618Q) /CSM/AH/AHA6-A/AHA618Q.Seq.d/                        854   0.0
AHA280 (AHA280Q) /CSM/AH/AHA2-D/AHA280Q.Seq.d/                        827   0.0
SHL333 (SHL333Q) /CSM/SH/SHL3-B/SHL333Q.Seq.d/                        787   0.0
SHG224 (SHG224Q) /CSM/SH/SHG2-A/SHG224Q.Seq.d/                        759   0.0
AHF815 (AHF815Q) /CSM/AH/AHF8-A/AHF815Q.Seq.d/                        747   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AZ137636|AZ137636.1 SP_0176_B1_E02_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=176 Col=3 Row=J, genomic survey sequence.    46   0.40   1
AC114640|AC114640.3 Mus musculus clone RP24-125I7, WORKING DRAFT SEQUENCE, 4 ordered pieces.    40   0.64   5
U39847|U39847.1 Caenorhabditis elegans AO13 ankyrin, AO66 ankyrin and AO49 ankyrin (unc-44) gene, three alternatively spliced forms, complete cds.    38   1.2    2
CD566140|CD566140.1 tab99g01.x1 Hydra EST -III Hydra magnipapillata cDNA 3', mRNA sequence.    44   1.6    1
AC114202|AC114202.4 Rattus norvegicus clone CH230-216M13, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44   1.6    1
U50071|U50071.1 Caenorhabditis elegans cosmid B0350, complete sequence.    38   1.6    2
AC068239|AC068239.1 Homo sapiens chromosome 2 clone RP11-804P4 map 2, LOW-PASS SEQUENCE SAMPLING.    36   2.0    3
AC130437|AC130437.1 Homo sapiens chromosome 3 clone RP11-740L19, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    42   2.1    5
BX649326|BX649326.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-209G10.    34   3.4    4
AC098256|AC098256.4 Rattus norvegicus clone CH230-1G22, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    42   6.3    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70651_1(U70651|pid:none) Mus musculus musculus sex determining ...    45   0.001
AC117075_53(AC117075|pid:none) Dictyostelium discoideum chromoso...    44   0.002
AF009521_1(AF009521|pid:none) Mus spretus sex determining protei...    43   0.004
(Q62563) RecName: Full=Sex-determining region Y protein; AltName...    43   0.004
AE014297_2522(AE014297|pid:none) Drosophila melanogaster chromos...    41   0.014
AY056469_1(AY056469|pid:none) Petromyzon marinus homeobox protei...    40   0.031
(P04929) Histidine-rich glycoprotein precursor.  &KGZQHL(A22692)...    40   0.031
AE014187_132(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.053
AM910991_170(AM910991|pid:none) Plasmodium knowlesi strain H chr...    39   0.053
(Q8MP30) RecName: Full=Uncharacterized histidine-rich protein DD...    39   0.069

 psg: 0.92  gvh: 0.34  alm: 0.46  top: 0.20  tms: 0.00  mit: 0.29  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AHA146 is cyt

>AHA146Z.Seq
NNNNNNNNNNCCCAAGAGGTTGTAAATCATTTGGTGGTTCATTCTGTATTCCAGGTGAAT
ATTCAGCTTGGTCAAGTGTTTATTTCGAATCACAACCTTGGATTTCAGATTTAACAATGG
ATGGTGAAGATATGATAATTTCAATTCGTGATCGTGGTGGTGATTTAGATCGTGATGTTG
GTACCTATGATATGTTAAGAGCTTGCTTTGATGGTGATCAATTAATACTTGAGAATAGTG
GAATTTGTGGAGGTGTTCCTGGTGCTCATCTATTACCTTCTGGTTATTTCGGTACACCTG
ACGGTATCAATAGTGGTGAATATTACAATGATAATTTCTATTATCCAACTGATAATGATG
GTCATGATAATGTAGCTTCGACTTCTGGTGTTGTAATTCCAGGTTATCATACTCTCTTTG
GTTCTTCATTAGATATCGATAGTGTTGGACAAGG