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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSA585
Library VS
(Link to library)
Clone ID VSA585
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16509-1
Original site URL
Representative seq. ID VSA585Z
(Link to Original site)
Representative DNA sequence 
>VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/
XXXXXXXXXXAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAAT
GCTAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCG
AGCTCCACTAACGATGCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAA
CTCTCTCAAATGTATAAGCAGTCTTTAACCAAAAAAAATATTTAAAAAAAAAAAAAAAAA
GAAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAATTTTAAATATAAATAATAATG
TTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGAAAAAAAAAAAAAAAAGAAAAAA
AGAATTTAAAAAAAAAAAAAAAAATAG
sequence update 2000. 2.21
Translated Amino Acid sequence 
---kllklsfyflvllls*c*gvslplcfallssssdnlelh*rcsssilrvnpshsyat
lsnv*AVFNQKKYLKKKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRKKKKKEKK
NLKKKKKI
Translated Amino Acid sequence (All Frames) 
Frame A:
---kllklsfyflvllls*c*gvslplcfallssssdnlelh*rcsssilrvnpshsyat
lsnv*AVFNQKKYLKKKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRKKKKKEKK
NLKKKKKI


Frame B:
---nf*nspstfwcfc*anakvslspfalhyspqaqiissstndapqvssglihhipmql
sqmykqsltkkni*kkkkkekkkilkyff*nqf*i*iimffffl*kkerkkekkkkkkkr
i*kkkkk*


Frame C:
---tfktllllfgasvklmlrclsppllcitllklr*srapltmllkypqg*sitflcns
lkcissl*pkkifkkkkkkkkkky*niffkinfkyk**cffffykkkkekkkkkkkrkke
fkkkkkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        396   e-110
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        394   e-109
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        394   e-109
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        394   e-109
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        394   e-109
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        394   e-109
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        394   e-109
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        394   e-109
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        394   e-109
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/                        394   e-109
own update 2004. 8. 5
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   394  e-126  2
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence.    56  3e-04  1
BM094544|BM094544.1 saj17c12.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-2832 5', mRNA sequence.    52  0.005  1
AC120895|AC120895.4 Rattus norvegicus clone CH230-180J3, WORKING DRAFT SEQUENCE, 5 unordered pieces.    50  0.020  1
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50  0.020  1
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    40  0.032  4
AB030651|AB030651.1 Felis catus mRNA for B-lymphocyte activation antigen B7-1 (CD80), complete cds.    38  0.045  2
AX348899|AX348899.1 Sequence 357 from Patent WO0202807.           34  0.050  3
AX344490|AX344490.1 Sequence 337 from Patent WO0200926.           34  0.050  3
L43882|L43882.1 Ixodes scapularis (isolate 2, strain Georgia 2) mitochondrial 12S ribosomal RNA (12S rDNA) gene fragment.    48  0.080  1
dna update 2003. 8.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000654_38(CP000654|pid:none) Enterobacter sp. 638, complete se...    32   9.2
protein update 2009. 3.19
PSORT 

 psg: 0.03  gvh: 0.22  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 1.64  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VSA585 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSA585Z
3' end seq. 
>VSA585Z.Seq
----------AAAACTTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAAT
GCTAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCG
AGCTCCACTAACGATGCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAA
CTCTCTCAAATGTATAAGCAGTCTTTAACCAAAAAAAATATTTAAAAAAAAAAAAAAAAA
GAAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAATTTTAAATATAAATAATAATG
TTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGAAAAAAAAAAAAAAAAGAAAAAA
AGAATTTAAAAAAAAAAAAAAAAATAG
Length of 3' end seq. 377
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -