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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSA561
Library VS
(Link to library)
Clone ID VSA561
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09878-1
Original site URL
Representative seq. ID VSA561Z
(Link to Original site)
Representative DNA sequence 
>VSA561 (VSA561Q) /CSM/VS/VSA5-C/VSA561Q.Seq.d/
XXXXXXXXXXTTTTCACATACACCAAATGTCAATCCAACCCAATTGGATAGTGAAACTGT
GAAAGCAATCTGTGCAGAATATAAAATTCACAATGCAGATGTGATTTTACGTGGAAATTG
TACAGTGGATGAATTCATCGATGTCATTGAAGGCAATCGTATCTACGTTCCATGTATTTA
CGTTTTAAATAAGATCGATGCTATCTCTATCGAAGAGTTGGACCTTTTAGATAAAATTCC
TCATTATGTTCCAATCTCTTCTCATTTGGAATGGAATTTAGATGCCCTCCTCGATAAAAT
TTGGGAATACTTAAAATTGATTAGAGTTTACACTAAACCAAAAGGTCTCATTCCAGATTA
CAATGAACCAGTCGTCATTAGAGGTGGTGAAGAAGCTTCAATTGAAACTTTTTGTAATCA
TATTCATAATTCAATTATTAGACAATTTAGATATGCTTTGGTTTGGGGTTCTTCAGCTAA
ACATAACCCTCAACGTTGTGGTAAGGATCACGTTTTAGCAGATGAAGATATTGTTCAAAT
TGTTAAAAAATAAGATCACATTTTAATTGGTGAAAGATAAGATTAAAAAAAA
sequence update 2000. 2.21
Translated Amino Acid sequence 
---SHTPNVNPTQLDSETVKAICAEYKIHNADVILRGNCTVDEFIDVIEGNRIYVPCIYV
LNKIDAISIEELDLLDKIPHYVPISSHLEWNLDALLDKIWEYLKLIRVYTKPKGLIPDYN
EPVVIRGGEEASIETFCNHIHNSIIRQFRYALVWGSSAKHNPQRCGKDHVLADEDIVQIV
KK*dhiliger*d*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
---fhihqmsiqpnwivkl*kqsvqnikftmqm*fyveivqwmnssmslkaivstfhvft
f*irsmlslskswtf*ikflimfqslliwngi*mpssikfgnt*n*leftlnqkvsfqit
mnqsslevvkklqlklfviifiiqlldnldmlwfgvlqlnitlnvvvritf*qmkilfkl
lknkitf*lvkdkikk


Frame B:
---ftytkcqsnpig**ncesnlcri*nsqcrcdftwklysg*ihrch*rqsylrsmylr
fk*drcylyrrvgpfr*nsslcsnlfsfgmefrcppr*nlgilkid*slh*tkrshsrlq
*tsrh*rw*rsfn*nfl*sys*fny*ti*icfglgffs*t*pstlw*gsrfsr*rycsnc
*kirshfnw*kirlkk


Frame C:
---SHTPNVNPTQLDSETVKAICAEYKIHNADVILRGNCTVDEFIDVIEGNRIYVPCIYV
LNKIDAISIEELDLLDKIPHYVPISSHLEWNLDALLDKIWEYLKLIRVYTKPKGLIPDYN
EPVVIRGGEEASIETFCNHIHNSIIRQFRYALVWGSSAKHNPQRCGKDHVLADEDIVQIV
KK*dhiliger*d*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA561 (VSA561Q) /CSM/VS/VSA5-C/VSA561Q.Seq.d/                       1138   0.0
VFI139 (VFI139Q) /CSM/VF/VFI1-B/VFI139Q.Seq.d/                       1104   0.0
VFK836 (VFK836Q) /CSM/VF/VFK8-B/VFK836Q.Seq.d/                       1096   0.0
SFF587 (SFF587Q) /CSM/SF/SFF5-D/SFF587Q.Seq.d/                       1096   0.0
SFJ838 (SFJ838Q) /CSM/SF/SFJ8-B/SFJ838Q.Seq.d/                       1094   0.0
AFB134 (AFB134Q) /CSM/AF/AFB1-B/AFB134Q.Seq.d/                       1094   0.0
VFN791 (VFN791Q) /CSM/VF/VFN7-D/VFN791Q.Seq.d/                       1092   0.0
SLB732 (SLB732Q) /CSM/SL/SLB7-B/SLB732Q.Seq.d/                       1084   0.0
VFO810 (VFO810Q) /CSM/VF/VFO8-A/VFO810Q.Seq.d/                       1059   0.0
VFA873 (VFA873Q) /CSM/VF/VFA8-D/VFA873Q.Seq.d/                       1051   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX552863|BX552863.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse125h08_p1c.    38  7e-10  4
AF014821|AF014821.1 Pisum sativum developmentally regulated GTP binding protein (PsDRG1) mRNA, complete cds.    48  8e-05  2
AL448896|AL448896.1 Paramecium tetraurelia sequence R25C08u of the end of plasmid  PT025E15. Similarity to DEVELOPMENTALLY REGULATED GTP-BINDING   PROTEIN 1 (DRG 1) (XDRG).    48  9e-05  2
BX563818|BX563818.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse69a05_p1c.    36  1e-04  3
CB271852|CB271852.1 taa26h08.x3 Hydra EST -II Hydra magnipapillata cDNA 3' similar to SW:DRG_XENLA P43690 DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN DRG ;, mRNA sequence.    46  0.001  2
CB717467|CB717467.1 AMGNNUC:NRDG1-00154-H3-A nrdg1 (10855) Rattus norvegicus cDNA clone nrdg1-00154-h3 5', mRNA sequence.    36  0.001  3
BM270581|BM270581.1 sak15a05.y1 Gm-c1075 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1075-3081 5' similar to TR:O22445 O22445 DEVELOPMENTALLY REGULATED GTP BINDING PROTEIN. ;, mRNA sequence.    42  0.001  2
CB072795|CB072795.1 taa30g04.x1 Hydra EST -II Hydra magnipapillata cDNA 3' similar to SW:DRG_XENLA P43690 DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN DRG ;, mRNA sequence.    46  0.002  2
CB272091|CB272091.1 taa30g04.x2 Hydra EST -II Hydra magnipapillata cDNA 3' similar to SW:DRG_XENLA P43690 DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN DRG ;, mRNA sequence.    46  0.002  2
BT006031|BT006031.1 Arabidopsis thaliana clone U51150 putative GTP-binding protein (At1g72660) mRNA, complete cds.    38  0.004  2
dna update 2003. 8.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK066361_1(AK066361|pid:none) Oryza sativa Japonica Group cDNA c...   259   5e-68
EU964619_1(EU964619|pid:none) Zea mays clone 280387 developmenta...   256   3e-67
AC146748_16(AC146748|pid:none) Medicago truncatula clone mth2-65...   255   6e-67
EU236700_1(EU236700|pid:none) Pisum sativum developmentally regu...   254   1e-66
BC053264_1(BC053264|pid:none) Danio rerio developmentally regula...   248   7e-65
AK080814_1(AK080814|pid:none) Mus musculus adult male corpora qu...   248   1e-64
BC020803_1(BC020803|pid:none) Homo sapiens developmentally regul...   248   1e-64
DQ215861_1(DQ215861|pid:none) Taeniopygia guttata clone 0058P004...   247   2e-64
EU670507_1(EU670507|pid:none) Drosophila sechellia strain ss77 1...   243   4e-63
EU310302_1(EU310302|pid:none) Drosophila mauritiana strain 105 1...   243   4e-63
protein update 2009. 7.27
PSORT 

 psg: 0.68  gvh: 0.27  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VSA561 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSA561Z
3' end seq. 
>VSA561Z.Seq
----------TTTTCACATACACCAAATGTCAATCCAACCCAATTGGATAGTGAAACTGT
GAAAGCAATCTGTGCAGAATATAAAATTCACAATGCAGATGTGATTTTACGTGGAAATTG
TACAGTGGATGAATTCATCGATGTCATTGAAGGCAATCGTATCTACGTTCCATGTATTTA
CGTTTTAAATAAGATCGATGCTATCTCTATCGAAGAGTTGGACCTTTTAGATAAAATTCC
TCATTATGTTCCAATCTCTTCTCATTTGGAATGGAATTTAGATGCCCTCCTCGATAAAAT
TTGGGAATACTTAAAATTGATTAGAGTTTACACTAAACCAAAAGGTCTCATTCCAGATTA
CAATGAACCAGTCGTCATTAGAGGTGGTGAAGAAGCTTCAATTGAAACTTTTTGTAATCA
TATTCATAATTCAATTATTAGACAATTTAGATATGCTTTGGTTTGGGGTTCTTCAGCTAA
ACATAACCCTCAACGTTGTGGTAAGGATCACGTTTTAGCAGATGAAGATATTGTTCAAAT
TGTTAAAAAATAAGATCACATTTTAATTGGTGAAAGATAAGATTAAAAAAAA
Length of 3' end seq. 582
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -