>VSA556 (VSA556Q) /CSM/VS/VSA5-C/VSA556Q.Seq.d/
GTGGTGATTTATTATTCCCAAGCATCGAATCCGAAAAACGTAAACATAAATTAAAGAGAT
TGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTTGTAGAACCATCA
CTACCGTTTTCTCACACGCCCAAAACGTTGTCATTTGCAGTTCATGTTCAACTGTTATTG
CTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAAGACAAAAATCCG
ACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTTTTTAATAGAAAATAAAC
AATAAAAAAAAATGCTATGTGCAGAGTAATAATATAA

GDLLFPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSSCSTVIA
QPTGGRARITAGCRLRQKSD*gyrpiaptlsifflienkq*kkmlcae**y

Frame A:
vviyysqasnpknvnin*rdwskhqtpslwistvtvvepslpfshtpktlsfavhvqlll
lnqlvvvleslpvvv*dknptkvtvqshqrfqfff**kinnkkkcyvqsnni


Frame B:
w*fiipkhrirkt*t*ikeigpstklllygyqlsrl*nhhyrfltrpkrchlqfmfncyc
stnwwsc*nhcrlsfktkirlrlpsnrtnafnfffnrk*tikknamcrvii*


Frame C:
GDLLFPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSSCSTVIA
QPTGGRARITAGCRLRQKSD*gyrpiaptlsifflienkq*kkmlcae**y

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ164 (VSJ164Q) /CSM/VS/VSJ1-C/VSJ164Q.Seq.d/                        555   e-157
VSI832 (VSI832Q) /CSM/VS/VSI8-B/VSI832Q.Seq.d/                        555   e-157
VSI793 (VSI793Q) /CSM/VS/VSI7-D/VSI793Q.Seq.d/                        555   e-157
VSI109 (VSI109Q) /CSM/VS/VSI1-A/VSI109Q.Seq.d/                        555   e-157
VSH788 (VSH788Q) /CSM/VS/VSH7-D/VSH788Q.Seq.d/                        555   e-157
VSH184 (VSH184Q) /CSM/VS/VSH1-D/VSH184Q.Seq.d/                        555   e-157
VSG713 (VSG713Q) /CSM/VS/VSG7-A/VSG713Q.Seq.d/                        555   e-157
VSG341 (VSG341Q) /CSM/VS/VSG3-B/VSG341Q.Seq.d/                        555   e-157
VSI587 (VSI587Q) /CSM/VS/VSI5-D/VSI587Q.Seq.d/                        549   e-156
VSG840 (VSG840Q) /CSM/VS/VSG8-B/VSG840Q.Seq.d/                        549   e-156

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   276  e-152  4
CF423215|CF423215.1 NcEST3d69b03.y1 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9U5N5 Q9U5N5 40S RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    40  8e-04  2
AX536650|AX536650.1 Sequence 251 from Patent WO02064766.          50  0.004  2
Z28156|Z28156.1 S.cerevisiae chromosome XI reading frame ORF YKL156w.    50  0.004  2
AZ923598|AZ923598.1 4908.gf21i19.s1 Saccharomyces cariocanus UFRJ 50791 Saccharomyces cariocanus genomic clone 4908.gf21i19.s1, DNA sequence.    48  0.005  2
Z28155|Z28155.1 S.cerevisiae chromosome XI reading frame ORF YKL155c.    50  0.009  2
BU641274|BU641274.2 mgmk005xK07f.b pmk1 in pBluescriptII sk(-) plasmid Magnaporthe grisea cDNA clone mgmk005xK07 5', mRNA sequence.    50  0.017  1
BF824319|BF824319.1 NcEST3a21h12.y1 Nc 1314 Tachyzoite cDNA Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36  0.076  2
BG235080|BG235080.1 NcEST3a40b01.y1 Nc 1314 Tachyzoite cDNA Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36  0.080  2
BF249095|BF249095.1 NcEST3a07a05.y1 Nc 1314 Tachyzoite cDNA Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36  0.081  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF082617_1(EF082617|pid:none) Picea sitchensis clone WS0299_E22 ...   124   8e-28
AY857484_1(AY857484|pid:none) Suberites domuncula S27 mRNA, comp...   123   2e-27
BT051468_1(BT051468|pid:none) Medicago truncatula clone MTYF1_F2...   122   3e-27
DQ241850_1(DQ241850|pid:none) Solanum tuberosum clone 187G01 rib...   121   7e-27
BT053528_1(BT053528|pid:none) Medicago truncatula clone MTYFP_FQ...   121   7e-27
EF146224_1(EF146224|pid:none) Populus trichocarpa clone WS0116_F...   121   9e-27
DQ673404_1(DQ673404|pid:none) Diaphorina citri putative ribosoma...   120   1e-26
EF179453_1(EF179453|pid:none) Xenopsylla cheopis clone XC-86 rib...   120   1e-26
(Q9M2F1) RecName: Full=40S ribosomal protein S27-2;  &AF083336_1...   120   2e-26
AL137898_1(AL137898|pid:none) Arabidopsis thaliana DNA chromosom...   120   2e-26

 psg: 0.75  gvh: 0.64  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.05  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSA556 is cyt

>VSA556E.Seq
GTGGTGATTTATTATTCCCAAGCATCGAATCCGAAAAACGTAAACATAAATTAAAGAGAT
TGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTTGTAGAACCATCA
CTACCGTTTTCTCACACGCCCAAAACGTTGTCATTTGCAGTTCATGTTCAACTGTTATTG
CTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAAGACAAAAATCCG
ACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTTTTTAATAGAAAATAAAC
AATAAAAAAAAATGCTATGTGCAGAGTAATAATATAA