>VSA552 (VSA552Q) /CSM/VS/VSA5-C/VSA552Q.Seq.d/
XXXXXXXXXXTTACAGAGAATCCAATTATTGAACATTATAAAGATTTAAAATCACAACAA
CAACAAATTATAAGTAGAATTTCAGAGTTTGAATCAGATGTAGGTGAATATGGTTTAGTT
ATAAAGGCAATTCAAAATTTAGAATCAAATAGGAAATGTTTCAGAATGGTTGGTGGTGTT
TTGGTAGAAAGAACTGTTGGTGAAGTTTTACCACAAATTAAACAAAATAGAGATGGTATT
AAAGCAGTTGTAAAGAAATTAGATGTAAATCTTTCAATTAAAACAAAAGAATTAAATGAT
TTTGTAGCTTTATATAAAATNAAAATAACTTCACAATAAATTAAAAAAAATAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---TENPIIEHYKDLKSQQQQIISRISEFESDVGEYGLVIKAIQNLESNRKCFRMVGGVL
VERTVGEVLPQIKQNRDGIKAVVKKLDVNLSIKTKELNDFVALYKXKITSQ*ikknkkkk
kkkkkkkkkkkkkkkk

Frame A:
---yresny*tl*rfkittttnyk*nfrv*ircr*iwfsykgnskfrik*emfqngwwcf
grkncw*sfttn*tk*rwy*ssckeircksfn*nkrik*fcsfi*nxnnftin*kk*kkk
kkkkkkkkkkkkkkkkk


Frame B:
---TENPIIEHYKDLKSQQQQIISRISEFESDVGEYGLVIKAIQNLESNRKCFRMVGGVL
VERTVGEVLPQIKQNRDGIKAVVKKLDVNLSIKTKELNDFVALYKXKITSQ*ikknkkkk
kkkkkkkkkkkkkkkk


Frame C:
---qriqllniiki*nhnnnkl*vefqslnqm*vnmv*l*rqfki*nqignvsewlvvfw
*kellvkfyhklnkiemvlkql*rn*m*ifqlkqkn*mil*lyikxk*lhnklkkikkkk
kkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA552 (VSA552Q) /CSM/VS/VSA5-C/VSA552Q.Seq.d/                        652   0.0
SSM850 (SSM850Q) /CSM/SS/SSM8-C/SSM850Q.Seq.d/                         40   0.026
SLC741 (SLC741Q) /CSM/SL/SLC7-B/SLC741Q.Seq.d/                         40   0.026
AHE115 (AHE115Q) /CSM/AH/AHE1-A/AHE115Q.Seq.d/                         40   0.026
VSE827 (VSE827Q) /CSM/VS/VSE8-B/VSE827Q.Seq.d/                         38   0.10
SSF606 (SSF606Q) /CSM/SS/SSF6-A/SSF606Q.Seq.d/                         38   0.10
SSD169 (SSD169Q) /CSM/SS/SSD1-C/SSD169Q.Seq.d/                         38   0.10
SLI309 (SLI309Q) /CSM/SL/SLI3-A/SLI309Q.Seq.d/                         38   0.10
VSK437 (VSK437Q) /CSM/VS/VSK4-B/VSK437Q.Seq.d/                         36   0.40
VSJ772 (VSJ772Q) /CSM/VS/VSJ7-C/VSJ772Q.Seq.d/                         36   0.40

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF465306|AF465306.1 Dictyostelium discoideum ABC transporter ABCA.4 (abca4) gene, complete cds.    40  0.067  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32  0.072  7
AC128669|AC128669.4 Mus musculus chromosome 17 clone RP24-115D21, complete sequence.    38  0.12  5
BX194008|BX194008.1 Danio rerio genomic clone DKEY-206H22, genomic survey sequence.    42  0.18  2
AP004174|AP004174.1 Mycoplasma penetrans genomic DNA, complete sequence, section 5/5.    32  0.25  9
AC104062|AC104062.3 Homo sapiens BAC clone RP11-11I23 from 4, complete sequence.    38  0.32  6
AZ525583|AZ525583.1 245PbF09 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    36  0.34  3
AZ525582|AZ525582.1 245PbF08 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    36  0.34  3
AL845507|AL845507.8 Zebrafish DNA sequence from clone CH211-196F15.    40  0.35  5
AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    38  0.40  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55GN3) RecName: Full=Probable prefoldin subunit 2;                  176   2e-43
(Q9LJ98) RecName: Full=Probable prefoldin subunit 2;  &AK221809_...    97   2e-19
EF084003_1(EF084003|pid:none) Picea sitchensis clone WS0274_N16 ...    87   1e-16
EF144857_1(EF144857|pid:none) Populus trichocarpa clone WS01119_...    86   3e-16
EU966240_1(EU966240|pid:none) Zea mays clone 292777 prefoldin su...    85   7e-16
AK067874_1(AK067874|pid:none) Oryza sativa Japonica Group cDNA c...    85   9e-16
AK059656_1(AK059656|pid:none) Oryza sativa Japonica Group cDNA c...    83   3e-15
BC074083_1(BC074083|pid:none) Danio rerio prefoldin subunit 2, m...    80   2e-14
BC116551_1(BC116551|pid:none) Danio rerio prefoldin subunit 2, m...    80   2e-14
BT074894_1(BT074894|pid:none) Osmerus mordax clone omor-eva-507-...    77   1e-13

 psg: 0.75  gvh: 0.33  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 24.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VSA552 is cyt

>VSA552Z.Seq
----------TTACAGAGAATCCAATTATTGAACATTATAAAGATTTAAAATCACAACAA
CAACAAATTATAAGTAGAATTTCAGAGTTTGAATCAGATGTAGGTGAATATGGTTTAGTT
ATAAAGGCAATTCAAAATTTAGAATCAAATAGGAAATGTTTCAGAATGGTTGGTGGTGTT
TTGGTAGAAAGAACTGTTGGTGAAGTTTTACCACAAATTAAACAAAATAGAGATGGTATT
AAAGCAGTTGTAAAGAAATTAGATGTAAATCTTTCAATTAAAACAAAAGAATTAAATGAT
TTTGTAGCTTTATATAAAATNAAAATAACTTCACAATAAATTAAAAAAAATAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA