>VSA544 (VSA544Q) /CSM/VS/VSA5-B/VSA544Q.Seq.d/
XXXXXXXXXXAACAATATTAATATTTTTAAAACGTGGGGTTGTTTATTTATTTTTTTTTT
TTATTTTTTAAAAATTTTTATCCACATAAAAATATTTTTAGCACTTTAAAAGAAATAAAA
TATATAAATATATAAGATGTATCAAGTTACAAAAGCAATTAAAAAAGTTTCACCAGTTTG
TAAAAATGGTTTGAAATCAACATCATTATATATCAATACCAATACAAATAGTAGAATGTC
AATTAGAAGTTATGCAAATGCAAATCCATCAAATATTGCTTCAACTACCTTTGCAAATAC
ACCAATGGGAGTTTTTGCAGATCAATTATTTTTACAACCAATTAACCCAGCAACAATTAG
ACCAATTACAGATTTAAGAATTGATACAAAATTTTCATTGAAAAAAAAGTTTGATAGAGC
ATTTTTAAAGGAGGATGAGGTAATGAAAGACCAACAAGATAAAGATAAAGAAGTAGAAAA
AGAAAAAGAAGTAGAGAAAGAAAAAGAAAAAACTATATAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

---ninifktwgclfifffyflkifihikiflal*kk*ni*IYKMYQVTKAIKKVSPVCK
NGLKSTSLYINTNTNSRMSIRSYANANPSNIASTTFANTPMGVFADQLFLQPINPATIRP
ITDLRIDTKFSLKKKFDRAFLKEDEVMKDQQDKDKEVEKEKEVEKEKEKTI*kkkkkkkk
kkkk

Frame A:
---tiliflkrgvvylffffif*kflst*kyf*hfkrnkiykyirciklqkqlkkfhqfv
kmv*nqhhyisipiqivecqlevmqmqihqillqlplqihqweflqinyfynqltqqqld
qlqi*eliqnfh*kksliehf*rrmr**ktnkikikk*kkkkk*rkkkkklykkkkkkkk
kkkkk


Frame B:
---qy*yf*nvglfiyffflffknfyphknifstlkeikyini*dvssyksn*ksftsl*
kwfeiniiiyqyqyk**nvn*klckcksikycfnylckytngsfcrsiifttn*psnn*t
nyrfkn*ykifiekkv**sifkgg*gnerptr*r*rsrkrkrsrerkrknyikkkkkkkk
kkkk


Frame C:
---ninifktwgclfifffyflkifihikiflal*kk*ni*IYKMYQVTKAIKKVSPVCK
NGLKSTSLYINTNTNSRMSIRSYANANPSNIASTTFANTPMGVFADQLFLQPINPATIRP
ITDLRIDTKFSLKKKFDRAFLKEDEVMKDQQDKDKEVEKEKEVEKEKEKTI*kkkkkkkk
kkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA544 (VSA544Q) /CSM/VS/VSA5-B/VSA544Q.Seq.d/                        579   e-164
CFI757 (CFI757Q) /CSM/CF/CFI7-C/CFI757Q.Seq.d/                        559   e-158
AFM676 (AFM676Q) /CSM/AF/AFM6-D/AFM676Q.Seq.d/                        559   e-158
AFB416 (AFB416Q) /CSM/AF/AFB4-A/AFB416Q.Seq.d/                        559   e-158
AFB237 (AFB237Q) /CSM/AF/AFB2-B/AFB237Q.Seq.d/                        559   e-158
AFF293 (AFF293Q) /CSM/AF/AFF2-D/AFF293Q.Seq.d/                        553   e-156
VHJ368 (VHJ368Q) /CSM/VH/VHJ3-C/VHJ368Q.Seq.d/                        287   9e-77
VHH133 (VHH133Q) /CSM/VH/VHH1-B/VHH133Q.Seq.d/                        107   2e-22
VHH847 (VHH847Q) /CSM/VH/VHH8-B/VHH847Q.Seq.d/                         66   6e-10
VHG291 (VHG291Q) /CSM/VH/VHG2-D/VHG291Q.Seq.d/                         66   6e-10

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116979|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.   335  e-156  5
AC012129|AC012129.2 Homo sapiens clone RP11-3P8, WORKING DRAFT SEQUENCE, 9 unordered pieces.    54  0.028  3
AE017025|AE017025.1 Bacillus anthracis str. Ames section 2 of 18 of the complete genome.    42  0.24  4
CC082389|CC082389.1 CSU-K33r.23H22.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.23H22, DNA sequence.    42  0.42  2
CC082083|CC082083.1 CSU-K33r.24F16.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.24F16, DNA sequence.    42  0.48  2
AC084687|AC084687.2 Homo sapiens chromosome 4 clone RP11-78A21 map 4, WORKING DRAFT SEQUENCE, 34 unordered pieces.    38  0.63  4
CC864783|CC864783.1 NDL.120C14.T7 Notre Dame Liverpool Aedes aegypti genomic clone NotreDame Liverpool-120C14, genomic survey sequence.    40  1.4  2
CC855774|CC855774.1 NDL.116I22.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NotreDame Liverpool-116I22, genomic survey sequence.    40  1.5  2
CC154207|CC154207.1 CSU-K34.128N20.SP6 CSU-K34 Aedes aegypti genomic clone CSU-K34-128N20, DNA sequence.    40  1.6  2
CC143118|CC143118.1 NDL.27O5.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.27O5, DNA sequence.    40  1.6  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116924_9(AC116924|pid:none) Dictyostelium discoideum chromosom...   194   2e-48
(Q5AXT6) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ...    33   5.1
AL844504_265(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.7
BX248334_63(BX248334|pid:none) Mycobacterium bovis subsp. bovis ...    32   8.7
BX842572_62(BX842572|pid:none) Mycobacterium tuberculosis H37Rv ...    32   8.7
AE000516_68(AE000516|pid:none) Mycobacterium tuberculosis CDC155...    32   8.7

 psg: 0.68  gvh: 0.29  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.50  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for VSA544 is mit

>VSA544Z.Seq
----------AACAATATTAATATTTTTAAAACGTGGGGTTGTTTATTTATTTTTTTTTT
TTATTTTTTAAAAATTTTTATCCACATAAAAATATTTTTAGCACTTTAAAAGAAATAAAA
TATATAAATATATAAGATGTATCAAGTTACAAAAGCAATTAAAAAAGTTTCACCAGTTTG
TAAAAATGGTTTGAAATCAACATCATTATATATCAATACCAATACAAATAGTAGAATGTC
AATTAGAAGTTATGCAAATGCAAATCCATCAAATATTGCTTCAACTACCTTTGCAAATAC
ACCAATGGGAGTTTTTGCAGATCAATTATTTTTACAACCAATTAACCCAGCAACAATTAG
ACCAATTACAGATTTAAGAATTGATACAAAATTTTCATTGAAAAAAAAGTTTGATAGAGC
ATTTTTAAAGGAGGATGAGGTAATGAAAGACCAACAAGATAAAGATAAAGAAGTAGAAAA
AGAAAAAGAAGTAGAGAAAGAAAAAGAAAAAACTATATAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA