>VSA526 (VSA526Q) /CSM/VS/VSA5-B/VSA526Q.Seq.d/
XXXXXXXXXXACTTCGTGATAGATTAAAGATTGATGANATCTATACCAATGATATCTATG
CTATCCTTCAGAAGTATGGTGTTGAAGCATGTCGTCAAGCTGTTACCTCTGAAATTTCAA
ATGTATTTGCTGCTTATGCTATCTCTGTCGATAAACGTCATCTCATCCTTTTAGGTGATT
ATATGACTTTTGAAGGTGGTTATAGAGCTTTAAATCGTATTGGTATTGAAAATAATACTT
CTCCTTTCCAGAAAATGTCTTTTGAAACTACTTTCTCTTTCCTTTCAAAAGCTTCTNTAA
TGGGTGACTATGATACTGTCACTTCTCCTTCTTCACGTATCGTTCTAGGTCAAATCGTTA
AAAATGGTACTGGTAGTTTTACAATCGTTGCTCCAGTTAAATAAATTTATAATAT

---LRDRLKIDXIYTNDIYAILQKYGVEACRQAVTSEISNVFAAYAISVDKRHLILLGDY
MTFEGGYRALNRIGIENNTSPFQKMSFETTFSFLSKASXMGDYDTVTSPSSRIVLGQIVK
NGTGSFTIVAPVK*iyn

Frame A:
---LRDRLKIDXIYTNDIYAILQKYGVEACRQAVTSEISNVFAAYAISVDKRHLILLGDY
MTFEGGYRALNRIGIENNTSPFQKMSFETTFSFLSKASXMGDYDTVTSPSSRIVLGQIVK
NGTGSFTIVAPVK*iyn


Frame B:
---fvid*rlmxsipmismlsfrsmvlkhvvkllplkfqmylllmlslsinvissf*vii
*llkvviel*ivlvlkiilllsrkcllkllslsfqkll*wvtmilsllllhvsf*vkslk
mvlvvlqsllqlnkfii


Frame C:
---s**ikd**xlyq*ylcypsevwc*smssscyl*nfkcicclcylcr*tsshpfr*ly
df*rwl*sfksywy*k*yfsfpenvf*nyflfpfksfxng*l*ychfsfftyrsrsnr*k
wyw*fynrcss*inl*y

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA526 (VSA526Q) /CSM/VS/VSA5-B/VSA526Q.Seq.d/                        791   0.0
VHK119 (VHK119Q) /CSM/VH/VHK1-A/VHK119Q.Seq.d/                        729   0.0
VHP842 (VHP842Q) /CSM/VH/VHP8-B/VHP842Q.Seq.d/                        716   0.0
VHP661 (VHP661Q) /CSM/VH/VHP6-C/VHP661Q.Seq.d/                        714   0.0
VHP572 (VHP572Q) /CSM/VH/VHP5-C/VHP572Q.Seq.d/                        710   0.0
VFE776 (VFE776Q) /CSM/VF/VFE7-D/VFE776Q.Seq.d/                         36   0.40
SHK834 (SHK834Q) /CSM/SH/SHK8-B/SHK834Q.Seq.d/                         36   0.40
SHC156 (SHC156Q) /CSM/SH/SHC1-C/SHC156Q.Seq.d/                         36   0.40
CHS417 (CHS417Q) /CSM/CH/CHS4-A/CHS417Q.Seq.d/                         36   0.40
CHS203 (CHS203Q) /CSM/CH/CHS2-A/CHS203Q.Seq.d/                         36   0.40

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.   751  0.0  1
CB936229|CB936229.1 USDA-FP_101886 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-26_F01 5', mRNA sequence.    32  1.1  3
AL356362|AL356362.21 Human DNA sequence from clone RP4-765A10 on chromosome 1p33.    44  1.3  1
BQ390975|BQ390975.1 NISC_mq16b09.x1 NICHD XGC Emb5 Silurana tropicalis cDNA clone IMAGE:5308385 3', mRNA sequence.    44  1.3  1
BF020069|BF020069.1 ux13e12.x1 Soares_thymus_2NbMT Mus musculus cDNA clone IMAGE:3471406 3', mRNA sequence.    44  1.3  1
BQ205811|BQ205811.1 UI-R-EP0-cob-a-10-0-UI.s1 UI-R-EP0 Rattus norvegicus cDNA clone UI-R-EP0-cob-a-10-0-UI 3', mRNA sequence.    44  1.3  1
BY741495|BY741495.1 Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370114F03, 5' end partial sequence.    44  1.3  1
BF516492|BF516492.1 UI-H-BW1-aoc-f-05-0-UI.s1 NCI_CGAP_Sub7 Homo sapiens cDNA clone IMAGE:3084417 3', mRNA sequence.    44  1.3  1
AI853513|AI853513.1 UI-M-BH0-ajd-d-04-0-UI.s1 NIH_BMAP_M_S1 Mus musculus cDNA clone UI-M-BH0-ajd-d-04-0-UI 3', mRNA sequence.    44  1.3  1
BG481952|BG481952.1 602526871F1 NIH_MGC_21 Homo sapiens cDNA clone IMAGE:4650448 5', mRNA sequence.    44  1.3  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14783_1(X14783|pid:none) Fission yeast DNA for nuc1 gene for RN...   155   5e-37
AE017344_305(AE017344|pid:none) Cryptococcus neoformans var. neo...   140   2e-32
(O54889) RecName: Full=DNA-directed RNA polymerase I subunit RPA...   136   3e-31
AK304131_1(AK304131|pid:none) Homo sapiens cDNA FLJ58792 complet...   135   5e-31
BC053744_1(BC053744|pid:none) Mus musculus polymerase (RNA) I po...   135   5e-31
BC017115_1(BC017115|pid:none) Homo sapiens polymerase (RNA) I po...   135   5e-31
AF000938_1(AF000938|pid:none) Mus musculus RNA polymerase I larg...   135   5e-31
AC012511_1(AC012511|pid:none) Homo sapiens BAC clone RP11-548P2 ...   135   5e-31
BC143345_1(BC143345|pid:none) Homo sapiens polymerase (RNA) I po...   135   5e-31
(O95602) RecName: Full=DNA-directed RNA polymerase I subunit RPA...   135   5e-31

 psg: 0.67  gvh: 0.43  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VSA526 is cyt

>VSA526Z.Seq
----------ACTTCGTGATAGATTAAAGATTGATGANATCTATACCAATGATATCTATG
CTATCCTTCAGAAGTATGGTGTTGAAGCATGTCGTCAAGCTGTTACCTCTGAAATTTCAA
ATGTATTTGCTGCTTATGCTATCTCTGTCGATAAACGTCATCTCATCCTTTTAGGTGATT
ATATGACTTTTGAAGGTGGTTATAGAGCTTTAAATCGTATTGGTATTGAAAATAATACTT
CTCCTTTCCAGAAAATGTCTTTTGAAACTACTTTCTCTTTCCTTTCAAAAGCTTCTNTAA
TGGGTGACTATGATACTGTCACTTCTCCTTCTTCACGTATCGTTCTAGGTCAAATCGTTA
AAAATGGTACTGGTAGTTTTACAATCGTTGCTCCAGTTAAATAAATTTATAATAT