>VSA510 (VSA510Q) /CSM/VS/VSA5-A/VSA510Q.Seq.d/
XXXXXXXXXXCAATAGAAGAGGTTTGGTTGTTGATGATTATTTCAGAGTGGCTGGTACTG
ATGGAATTTGGTCAATTGGTGATGCTTCAATTAATCCATCAAAACCATTGGCTCAAACTG
CTCAAGTTGCTTCTCAACAAGGTCGTTATTTAGGCAGATTATTCAATCAATTGGCAGAGG
AAATGAATAATGATCTCATTAAAAAGAGAGAGAATCCAGATGCACATAAAGAGGAAAAAG
AAAAACGACAAGAGAAATTAAACCTTTTCAATTCAATCACTGGTTCAAATAAAAGCTTTG
AGGAAGCCGTCAAAGAGAAACCATTATTTAAATATAAACATATGGGTACTTTAGCTTATG
TTGGTGATCATCAAGCTGTAGCTGAATTCAAAGGTGATCATTCAACAACTGTCTCTGAAG
GTTATATCACTTATTACCTCTGGAGAAGTGTATATTTCACTAAACTTTTAAGTGTTAGAA
ATCGTGCTTTAGTCTCTTTCGATTGGTTAAAGAGTAGTGTTTTCGGTAGAGATATTTCAA
GAGGTTAAAATTAATTAATTAAAAAATAATAATAATAATAATAATAATAATAGTAATAAT

---NRRGLVVDDYFRVAGTDGIWSIGDASINPSKPLAQTAQVASQQGRYLGRLFNQLAEE
MNNDLIKKRENPDAHKEEKEKRQEKLNLFNSITGSNKSFEEAVKEKPLFKYKHMGTLAYV
GDHQAVAEFKGDHSTTVSEGYITYYLWRSVYFTKLLSVRNRALVSFDWLKSSVFGRDISR
G*n*likk***********

Frame A:
---NRRGLVVDDYFRVAGTDGIWSIGDASINPSKPLAQTAQVASQQGRYLGRLFNQLAEE
MNNDLIKKRENPDAHKEEKEKRQEKLNLFNSITGSNKSFEEAVKEKPLFKYKHMGTLAYV
GDHQAVAEFKGDHSTTVSEGYITYYLWRSVYFTKLLSVRNRALVSFDWLKSSVFGRDISR
G*n*likk***********


Frame B:
---ieevwllmiisewlvlmefgqlvmlqlihqnhwlkllklllnkvvi*adysinwqrk
*imislkreriqmhikrkkkndkrn*tfsiqslvqikalrkpskrnhylniniwvl*lml
viikl*lnskviiqqlslkvislitsgevyislnf*vleivl*slsig*rvvfsveifqe
vkin*lknnnnnnnnnsnn


Frame C:
---*krfgc**lfqsgwy*wnlvnw*cfn*siktigsncsscfstrslfrqiiqsigrgn
e**sh*keresrct*rgkrkttreikpfqfnhwfk*kl*gsrqretii*i*tygyfslcw
*ssscs*iqr*sfnncl*rlyhllplekcifh*tfkc*kscfslfrlvke*cfr*ryfkr
lklin*kiiiiiiiiivi

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA510 (VSA510Q) /CSM/VS/VSA5-A/VSA510Q.Seq.d/                       1057   0.0
VHP679 (VHP679Q) /CSM/VH/VHP6-D/VHP679Q.Seq.d/                         36   0.59
VHC359 (VHC359Q) /CSM/VH/VHC3-C/VHC359Q.Seq.d/                         36   0.59
SSL171 (SSL171Q) /CSM/SS/SSL1-C/SSL171Q.Seq.d/                         36   0.59
SSI303 (SSI303Q) /CSM/SS/SSI3-A/SSI303Q.Seq.d/                         36   0.59
AHF228 (AHF228Q) /CSM/AH/AHF2-B/AHF228Q.Seq.d/                         36   0.59
AHE880 (AHE880Q) /CSM/AH/AHE8-D/AHE880Q.Seq.d/                         36   0.59
AFJ729 (AFJ729Q) /CSM/AF/AFJ7-B/AFJ729Q.Seq.d/                         36   0.59
AFI839 (AFI839Q) /CSM/AF/AFI8-B/AFI839Q.Seq.d/                         36   0.59
AFF719 (AFF719Q) /CSM/AF/AFF7-A/AFF719Q.Seq.d/                         36   0.59

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.  1049  0.0  1
AL929558|AL929558.9 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-159N7.    42  0.26  3
AL396810|AL396810.1 T3 end of clone AR0AA032G08 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    46  0.50  1
AL396599|AL396599.1 T7 end of clone AR0AA031D05 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    46  0.50  1
AL396937|AL396937.1 T7 end of clone XAR0AA001F10 of library XAR0AA from strain CBS 732  of Zygosaccharomyces rouxii.    46  0.50  1
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    34  1.2  7
AC122153|AC122153.4 Oryctolagus cuniculus clone LB1-9L8, complete sequence.    50  1.2  3
AE010610|AE010610.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 152 of 197 of the complete genome.    36  1.5  2
AC016206|AC016206.3 Homo sapiens clone RP11-25F2, WORKING DRAFT SEQUENCE, 11 unordered pieces.    40  1.7  5
AC073744|AC073744.1 Mus musculus clone RP23-288A3, WORKING DRAFT SEQUENCE, 196 unordered pieces.    44  2.0  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116982_30(AC116982|pid:none) Dictyostelium discoideum chromoso...   359   4e-98
AJ006852_1(AJ006852|pid:none) Yarrowia lipolytica NDH2 gene, com...   133   3e-30
AP007154_319(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...   131   2e-29
AM270167_7(AM270167|pid:none) Aspergillus niger contig An08c0120...   130   2e-29
CU633900_397(CU633900|pid:none) Podospora anserina genomic DNA c...   118   1e-25
(O14121) RecName: Full=Probable NADH-ubiquinone oxidoreductase C...   115   7e-25
FM992693_276(FM992693|pid:none) Candida dubliniensis CD36 chromo...   104   2e-21
AJ390487_1(AJ390487|pid:none) Candida albicans mitochondrial mRN...   103   3e-21
BX649605_71(BX649605|pid:none) Aspergillus fumigatus BAC pilot p...   103   5e-21
FM992690_322(FM992690|pid:none) Candida dubliniensis CD36 chromo...   103   5e-21

 psg: 0.63  gvh: 0.44  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.02
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	 16.0 %: mitochondrial

>> prediction for VSA510 is cyt

>VSA510Z.Seq
----------CAATAGAAGAGGTTTGGTTGTTGATGATTATTTCAGAGTGGCTGGTACTG
ATGGAATTTGGTCAATTGGTGATGCTTCAATTAATCCATCAAAACCATTGGCTCAAACTG
CTCAAGTTGCTTCTCAACAAGGTCGTTATTTAGGCAGATTATTCAATCAATTGGCAGAGG
AAATGAATAATGATCTCATTAAAAAGAGAGAGAATCCAGATGCACATAAAGAGGAAAAAG
AAAAACGACAAGAGAAATTAAACCTTTTCAATTCAATCACTGGTTCAAATAAAAGCTTTG
AGGAAGCCGTCAAAGAGAAACCATTATTTAAATATAAACATATGGGTACTTTAGCTTATG
TTGGTGATCATCAAGCTGTAGCTGAATTCAAAGGTGATCATTCAACAACTGTCTCTGAAG
GTTATATCACTTATTACCTCTGGAGAAGTGTATATTTCACTAAACTTTTAAGTGTTAGAA
ATCGTGCTTTAGTCTCTTTCGATTGGTTAAAGAGTAGTGTTTTCGGTAGAGATATTTCAA
GAGGTTAAAATTAATTAATTAAAAAATAATAATAATAATAATAATAATAATAGTAATAAT