>VSA508 (VSA508Q) /CSM/VS/VSA5-A/VSA508Q.Seq.d/
XXXXXXXXXXAATGAGATTATTATTAGCCCTCTTTTTCGTTCTTGCTTTAGTTTCCCCAT
CTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGCCGATAAATTCCAAATTACCAATG
TAGTATTAGACCCACCAACACCAGTTNGGGGACAAGATATCACAATCAGTGCATCAGGTA
TTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGTTAAAGTCAAATATGGTTTCATTA
CACTTATCAATGAAAATGTTTCTATTTGCAGTTCTCAAGACCCATTAGCATGCCCAATTG
CTGCTGGTGATTACCAAAAGAATATGACCGAAATGATTCCATCTGATGCTCCATCAGGTA
AATACACTGGTAACGTTGTTATCACCGATCAAAACAATGCTGAAATCGCCTGTATTGATG
TTGATATTAACTTGTAAACGAATAAAATAAAATAAAATAAAATAAAAACACACCATCGAT
AAATTATTTATAAATTAAAAAA

---MRLLLALFFVLALVSPSFTQVWSNCGTAADKFQITNVVLDPPTPVXGQDITISASGI
LDETVTGGNVAVKVKYGFITLINENVSICSSQDPLACPIAAGDYQKNMTEMIPSDAPSGK
YTGNVVITDQNNAEIACIDVDINL*tnkik*nkikthhr*iiyklk

Frame A:
---MRLLLALFFVLALVSPSFTQVWSNCGTAADKFQITNVVLDPPTPVXGQDITISASGI
LDETVTGGNVAVKVKYGFITLINENVSICSSQDPLACPIAAGDYQKNMTEMIPSDAPSGK
YTGNVVITDQNNAEIACIDVDINL*tnkik*nkikthhr*iiyklk


Frame B:
---*dyy*psfsfll*fphlspkfgqivvllpinsklpm*y*thqhqxgdkisqsvhqvf
smkpslvemlplksnmvslhlsmkmflfavlkth*haqlllvitkri*pk*fhlmlhqvn
tlvtllspiktmlkspvlmliltckrik*nkik*khtidklfin*k


Frame C:
---eiiisplfrscfsfpifhpslvklwyccr*ipnyqcsirptntsxgtryhnqcirys
r*nrhwwkccr*sqiwfhytyq*kcfylqfsrpismpnccw*lpkeydrndsi*csir*i
hw*rcyhrskqc*nrly*c*y*lvne*nkik*nkntpsinyl*ikk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA508 (VSA508Q) /CSM/VS/VSA5-A/VSA508Q.Seq.d/                        846   0.0
VSK373 (VSK373Q) /CSM/VS/VSK3-D/VSK373Q.Seq.d/                        831   0.0
VSJ851 (VSJ851Q) /CSM/VS/VSJ8-C/VSJ851Q.Seq.d/                        831   0.0
VSJ841 (VSJ841Q) /CSM/VS/VSJ8-B/VSJ841Q.Seq.d/                        831   0.0
VSJ516 (VSJ516Q) /CSM/VS/VSJ5-A/VSJ516Q.Seq.d/                        831   0.0
VSJ452 (VSJ452Q) /CSM/VS/VSJ4-C/VSJ452Q.Seq.d/                        831   0.0
VSI417 (VSI417Q) /CSM/VS/VSI4-A/VSI417Q.Seq.d/                        831   0.0
VSI354 (VSI354Q) /CSM/VS/VSI3-C/VSI354Q.Seq.d/                        831   0.0
VSG174 (VSG174Q) /CSM/VS/VSG1-D/VSG174Q.Seq.d/                        831   0.0
VSG156 (VSG156Q) /CSM/VS/VSG1-C/VSG156Q.Seq.d/                        831   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX160259|BX160259.1 Danio rerio genomic clone DKEY-146C24, genomic survey sequence.    46  0.41  1
AC141863|AC141863.6 Medicago truncatula clone mth2-14b10, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.6  1
AC126782|AC126782.12 Medicago truncatula clone mth2-14p11, WORKING DRAFT SEQUENCE, 36 unordered pieces.    44  1.6  1
AX202109|AX202109.1 Sequence 39 from Patent WO0153531.            40  3.6  2
D87442|D87442.1 Human mRNA for KIAA0253 gene, partial cds.        40  3.9  2
AX464068|AX464068.1 Sequence 201 from Patent WO0140466.           40  3.9  2
AX244143|AX244143.1 Sequence 2 from Patent WO0167109.             40  3.9  2
AF240468|AF240468.1 Homo sapiens nicastrin mRNA, complete cds.    40  4.1  2
BC047621|BC047621.1 Homo sapiens nicastrin, mRNA (cDNA clone MGC:51016 IMAGE:4827966), complete cds.    40  4.2  2
AX375622|AX375622.1 Sequence 9 from Patent WO0208278.             40  4.4  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54SZ8) RecName: Full=Putative phosphatidylglycerol/phosphatidy...   131   1e-29
(Q54KP7) RecName: Full=Putative phosphatidylglycerol/phosphatidy...    85   1e-15
(Q4P580) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    84   1e-15
CU928167_354(CU928167|pid:none) Kluyveromyces thermotolerans str...    74   2e-12
(Q7RZ85) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    72   6e-12
(Q4X136) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    69   6e-11
(Q6CNE0) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    68   1e-10
AK227594_1(AK227594|pid:none) Arabidopsis thaliana mRNA for hypo...    68   1e-10
CP000502_275(CP000502|pid:none) Pichia stipitis CBS 6054 chromos...    66   4e-10
AM920430_43(AM920430|pid:none) Penicillium chrysogenum Wisconsin...    65   7e-10

 psg: 0.99  gvh: 0.88  alm: 0.47  top: 0.33  tms: 0.00  mit: 0.38  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: extracellular, including cell wall
	 12.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: Golgi

>> prediction for VSA508 is exc

>VSA508Z.Seq
----------AATGAGATTATTATTAGCCCTCTTTTTCGTTCTTGCTTTAGTTTCCCCAT
CTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGCCGATAAATTCCAAATTACCAATG
TAGTATTAGACCCACCAACACCAGTTNGGGGACAAGATATCACAATCAGTGCATCAGGTA
TTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGTTAAAGTCAAATATGGTTTCATTA
CACTTATCAATGAAAATGTTTCTATTTGCAGTTCTCAAGACCCATTAGCATGCCCAATTG
CTGCTGGTGATTACCAAAAGAATATGACCGAAATGATTCCATCTGATGCTCCATCAGGTA
AATACACTGGTAACGTTGTTATCACCGATCAAAACAATGCTGAAATCGCCTGTATTGATG
TTGATATTAACTTGTAAACGAATAAAATAAAATAAAATAAAATAAAAACACACCATCGAT
AAATTATTTATAAATTAAAAAA