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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSA454
Library VS
(Link to library)
Clone ID VSA454
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15714-1
Original site URL
Representative seq. ID VSA454E
(Link to Original site)
Representative DNA sequence 
>VSA454 (VSA454Q) /CSM/VS/VSA4-C/VSA454Q.Seq.d/
AATTAATTTAAAATAATAATAATAAATTTTATTATATGGTTTATGTTTTAATTAACAAAA
CCAAATAAAAAGAAGTAAAAATAAATAAATAAATAATAATAAAATAATAATAATAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 2000. 2.21
Translated Amino Acid sequence 
inlk****illyglcfn*qnqikrsknk*INNNKIIIIIKKKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
n*fkiiiinfiiwfmf*ltkpnkkk*k*ink***nnnnnkkkkkkkkkkkkkkk


Frame B:
inlk****illyglcfn*qnqikrsknk*INNNKIIIIIKKKKKKKKKKKKKK


Frame C:
li*nnnnkfyymvyvlinktk*kevkink*iiik*****kkkkkkkkkkkkkk
Homology vs CSM-cDNA -
own update ----------
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
   -1.00    -1.00    -1.00

[blastall] WARNING:  [000.000]  SetUpBlastSearch failed.
[blastall] ERROR:  [000.000]  BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.







Dictyostelium discoideum cDNA Project Home
dna update 2003. 9.17
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 77,470,754
protein update 2009. 7.27
PSORT 

 psg: 0.03  gvh: -0.32  alm: 0.74  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 1.05  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial

>> prediction for VSA454 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA454E
Full length Seq. 
>VSA454E.Seq
AATTAATTTAAAATAATAATAATAAATTTTATTATATGGTTTATGTTTTAATTAACAAAA
CCAAATAAAAAGAAGTAAAAATAAATAAATAAATAATAATAAAATAATAATAATAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 162