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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSA376
Library VS
(Link to library)
Clone ID VSA376
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14428-1
Original site URL
Representative seq. ID VSA376Z
(Link to Original site)
Representative DNA sequence 
>VSA376 (VSA376Q) /CSM/VS/VSA3-D/VSA376Q.Seq.d/
XXXXXXXXXXTTTTAGCAGCTGTTCCAAATAAGAATTCGTTTTTGTTTGTGCTGATGAAA
AGTTGGAATCCTATTGGAAATATCAATTTGAGAATGGTGATTGTAGAGTTTTATTCCGTC
CAAAGATTTGTAACACAAATGATGTTAACACATTCAAATTAGAGACTATTATTCCAACTC
AAGGTGTTTATACTTTAATGACTCGTTTAAATATTAAAACAAATGAACAAAAAATGAAAG
ATAATTTATCAGCAGTTAAAAAAGCATTAAAATCATCATCAGATTGGTCAATTGATGAAT
CATCATTAGAAACTGTTTATCCAAAAGTTGCAGATGATTTAAAGAATAGTTTTGGTCATA
TCTTTGCTGGTATCGTCGAAAAGGTCGCTGCTAATCTTGCCAAACGTTGTGCTGATGAAA
TGATCTTAGAAGCAGTTCAAGAAGCAACTACAAATCATACAATCGTCATTAAACATGATG
CTAACTTGAACGCTCATTGGTCATGGTCATTTGAATCTGGTAATATCGTTATCACTTTCA
AATCTGTAACCAATACTAACGATGTTCAAACATTTGATTTCATTAAATTATTATAAATAA
ACAAATAAATAATTAATAAAATATTATAAAAAAAAA
sequence update 2000. 2.29
Translated Amino Acid sequence 
---fsscsk*EFVFVCADEKLESYWKYQFENGDCRVLFRPKICNTNDVNTFKLETIIPTQ
GVYTLMTRLNIKTNEQKMKDNLSAVKKALKSSSDWSIDESSLETVYPKVADDLKNSFGHI
FAGIVEKVAANLAKRCADEMILEAVQEATTNHTIVIKHDANLNAHWSWSFESGNIVITFK
SVTNTNDVQTFDFIKLL*ink*iinkil*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
---fsscsk*EFVFVCADEKLESYWKYQFENGDCRVLFRPKICNTNDVNTFKLETIIPTQ
GVYTLMTRLNIKTNEQKMKDNLSAVKKALKSSSDWSIDESSLETVYPKVADDLKNSFGHI
FAGIVEKVAANLAKRCADEMILEAVQEATTNHTIVIKHDANLNAHWSWSFESGNIVITFK
SVTNTNDVQTFDFIKLL*ink*iinkil*kk


Frame B:
---laavpnknsflfvlmkswnpigninlrmvivefysvqrfvtqmmlthsn*rllfqlk
vfil**lv*ilkqmnkk*kiiyqqlkkh*nhhqigqlmnhh*klfiqklqmi*rivlvis
llvsskrsllilpnvvlmk*s*kqfkkqlqiiqsslnmmlt*tlighghlnlvislslsn
l*piltmfkhlislnyyk*tnk*likyykkk


Frame C:
---*qlfqirirfclc**kvgilleisi*ew*l*sfipskdl*hk*c*hiqirdyysnsr
clyfndsfky*nk*tkner*fiss*ksikiiirlvn**iiirnclskscr*fke*fwsyl
cwyrrkgrc*scqtlc**ndlrsssrsnyksynrh*t*c*lerslvmvi*iw*yryhfqi
cnqy*rcsni*fh*iiinkqinn**niikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA376 (VSA376Q) /CSM/VS/VSA3-D/VSA376Q.Seq.d/                       1130   0.0
CHO264 (CHO264Q) /CSM/CH/CHO2-C/CHO264Q.Seq.d/                        339   3e-92
VHO774 (VHO774Q) /CSM/VH/VHO7-D/VHO774Q.Seq.d/                         56   7e-07
VHO513 (VHO513Q) /CSM/VH/VHO5-A/VHO513Q.Seq.d/                         56   7e-07
VHN289 (VHN289Q) /CSM/VH/VHN2-D/VHN289Q.Seq.d/                         56   7e-07
VHN245 (VHN245Q) /CSM/VH/VHN2-B/VHN245Q.Seq.d/                         56   7e-07
VHL678 (VHL678Q) /CSM/VH/VHL6-D/VHL678Q.Seq.d/                         56   7e-07
VHL520 (VHL520Q) /CSM/VH/VHL5-A/VHL520Q.Seq.d/                         56   7e-07
VHJ644 (VHJ644Q) /CSM/VH/VHJ6-B/VHJ644Q.Seq.d/                         56   7e-07
VHJ560 (VHJ560Q) /CSM/VH/VHJ5-C/VHJ560Q.Seq.d/                         56   7e-07
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***.  1084  0.0  2
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.  1084  0.0  5
AC099554|AC099554.2 Homo sapiens chromosome 5 clone RP11-61G23, complete sequence.    50  0.034  1
AC055812|AC055812.5 Homo sapiens chromosome 17 clone RP11-478B21 map 17, WORKING DRAFT SEQUENCE, 11 unordered pieces.    50  0.034  1
AC099497|AC099497.2 Homo sapiens chromosome 5 clone RP11-139A10, complete sequence.    50  0.034  1
BX240798|BX240798.1 Danio rerio genomic clone DKEY-288P18, genomic survey sequence.    44  0.12  2
AL953865|AL953865.8 Zebrafish DNA sequence from clone CH211-113E8 in linkage group 1.    42  0.25  3
AC091056|AC091056.4 Homo sapiens chromosome 15 clone RP11-83J16 map 15, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  0.26  3
AC018868|AC018868.4 Homo sapiens BAC clone RP11-83J16 from 15, complete sequence.    44  0.26  3
AC090783|AC090783.2 Homo sapiens chromosome 15 clone RP11-205B5 map 15, WORKING DRAFT SEQUENCE, 11 unordered pieces.    44  0.31  3
dna update 2003. 8.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_21(AC117081|pid:none) Dictyostelium discoideum chromoso...   328   1e-88
AC117081_29(AC117081|pid:none) Dictyostelium discoideum chromoso...   327   1e-88
protein update 2009. 3.19
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.08  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSA376 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSA376Z
3' end seq. 
>VSA376Z.Seq
----------TTTTAGCAGCTGTTCCAAATAAGAATTCGTTTTTGTTTGTGCTGATGAAA
AGTTGGAATCCTATTGGAAATATCAATTTGAGAATGGTGATTGTAGAGTTTTATTCCGTC
CAAAGATTTGTAACACAAATGATGTTAACACATTCAAATTAGAGACTATTATTCCAACTC
AAGGTGTTTATACTTTAATGACTCGTTTAAATATTAAAACAAATGAACAAAAAATGAAAG
ATAATTTATCAGCAGTTAAAAAAGCATTAAAATCATCATCAGATTGGTCAATTGATGAAT
CATCATTAGAAACTGTTTATCCAAAAGTTGCAGATGATTTAAAGAATAGTTTTGGTCATA
TCTTTGCTGGTATCGTCGAAAAGGTCGCTGCTAATCTTGCCAAACGTTGTGCTGATGAAA
TGATCTTAGAAGCAGTTCAAGAAGCAACTACAAATCATACAATCGTCATTAAACATGATG
CTAACTTGAACGCTCATTGGTCATGGTCATTTGAATCTGGTAATATCGTTATCACTTTCA
AATCTGTAACCAATACTAACGATGTTCAAACATTTGATTTCATTAAATTATTATAAATAA
ACAAATAAATAATTAATAAAATATTATAAAAAAAAA
Length of 3' end seq. 626
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -