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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA131
Library AH
(Link to library)
Clone ID AHA131
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15679-1
Original site URL
Representative seq. ID AHA131P
(Link to Original site)
Representative DNA sequence 
>AHA131 (AHA131Q) /CSM/AH/AHA1-B/AHA131Q.Seq.d/
ATAAAATAAAAATGTTTACAGAAAATCAAAATAATAATCAAAGACATGCACTTAAAACTG
AAATTAAAACAGTTTTTAATTCAGATAGTGGTGTTACTTATTTTTCAATTTTAATTGAAA
CATCATCAAAAATGTCATTGTATAATGTAATTATTAAGACATTTATTACTCAACTTCAAA
AAGCTAATAGAGAGTGTCAAATTCAAATCATTACCTATGGTGATAGTGTTAATACAATCT
TTGAATTTGATTCGGAACCAAATGAATTAAAAGATAGCTTAAAAGAAATTAAATTCTCTA
AAGATAATGAAGAAGCAAAATTGGGTGAAGCAATGAGAATGTGTTTCAATAATATCGAAT
CCAATTGGTCCAGTGATTTAATGTCAAAGATCATCATCATCAGTTCGGGTCAATCTACTG
ATGATTCAAGTGATGATTTAGTTGATATCTTGAGTTTGGATAATAATAGTATCTATGGTT
TGGCAGGCTGCAACCTAGCAAACAAATCATCCGATGAGGCTGTAAAAGATTTGCAATCAC
TTTTACCAGACCAAAAAGTTATCCCATTGGGTAAGAXXXXXXXXXXAAACTCATAAAGAT
ATCTTTAAAGATGTTCAATATCTTAGATTATTAACCAAAGCAGTTCAATTGTGTAAAGTT
AAAAATGAAAAAGATATAATGAACAAAGTTAAAGGTATTTCAAATTTATCAATTAATGAT
AATAATAATAGTTTTAATCAAACTCCAATTAAAAATCAACCTTTTTTTGAATCATCATCA
ACTTCTTCACCTTCACCAGCTTTCTTTAGATCACCAATTCAACAACAACAACAACAAACC
TCTACCACTTCAACTCAATCACCATCACCATCATCTTCATCAGCATCAACACCACCACCA
CCATCACAAATGCTTAATGAACAACCAAGTAAAACTATCAATGTAACTATTGATGTAGTT
ACTGATTCAAGTGGTACCGTTTTAACTTCATTCGAAATTGAATCTTCAACAAATGAATCT
GTCTCTGAATTAAAATGTAAACTTATTAATGAAATTGATCCTGAAATGAATGCTAATGAT
TGGAGTATTACAAAAGAATCTGGTACAGTTTTATTCGAATCTGCAAGATTATCATCCATT
ATTAAATCTTTTGATAATTCAGATTCCATTAAATTGGTTTTAAAGAAAAAACAAAAATTA
TTTTAAAAATTAACAAAACTAATAATAGGGTAAAAAAATAAAAAAAAATAAAAAAATTAA
A
sequence update 2002.10.25
Translated Amino Acid sequence 
KIKMFTENQNNNQRHALKTEIKTVFNSDSGVTYFSILIETSSKMSLYNVIIKTFITQLQK
ANRECQIQIITYGDSVNTIFEFDSEPNELKDSLKEIKFSKDNEEAKLGEAMRMCFNNIES
NWSSDLMSKIIIISSGQSTDDSSDDLVDILSLDNNSIYGLAGCNLANKSSDEAVKDLQSL
LPDQKVIPLGK---

---THKDIFKDVQYLRLLTKAVQLCKVKNEKDIMNKVKGISNLSINDNNNSFNQTPIKNQ
PFFESSSTSSPSPAFFRSPIQQQQQQTSTTSTQSPSPSSSSASTPPPPSQMLNEQPSKTI
NVTIDVVTDSSGTVLTSFEIESSTNESVSELKCKLINEIDPEMNANDWSITKESGTVLFE
SARLSSIIKSFDNSDSIKLVLKKKQKLF*kltkliig*knkkk*kn*
Translated Amino Acid sequence (All Frames) 
Frame A:
ik*kclqkikiiikdmhlklklkqfliqivvllifqf*lkhhqkchcim*llrhlllnfk
kliesvkfkslpmvivliqslnlirnqmn*kia*kklnslkimkkqnwvkq*ecvsiisn
pigpvi*cqrssssvrvnllmiqvmi*lis*vwiiivsmvwqaat*qtnhpmrl*kicnh
fyqtkklshwvr---

---klikislkmfnildy*pkqfncvklkmkki**tklkvfqiyqlmiiiivliklqlki
nlflnhhqllhlhqlsldhqfnnnnnkplplqlnhhhhhlhqhqhhhhhhkclmnnqvkl
sm*llm*lliqvvpf*lhsklnlqqmnlsln*nvnllmklilk*mlmigvlqknlvqfys
nlqdyhpllnlliiqiplnwf*rknknyfkn*qn***gkkikknkkik

Frame B:
*nknvyrksk**sktct*n*n*nsf*fr*wcylffnfn*niiknviv*cny*diyystsk
s**rvsnsnhylw**c*ynl*i*fgtk*ikr*lkrn*il*r**rskig*snenvfq*yri
qlvq*fnvkdhhhqfgsiy**fk**fs*ylefg***ylwfgrlqpskqiir*gckrfait
ftrpksypig*---

---ns*ryl*rcsis*iinqsssiv*s*k*kryneqs*ryfkfin******f*snsn*ks
tff*iiinfftftsfl*itnstttttnlyhfnsititiifisinttttitna**ttk*ny
qcny*csy*fkwyrfnfirn*ifnk*icl*ikm*ty**n*s*nec**leyykriwysfir
ickiiihy*if**frfh*igfkektkiilkinktnnrvkk*kkikkl

Frame C:
KIKMFTENQNNNQRHALKTEIKTVFNSDSGVTYFSILIETSSKMSLYNVIIKTFITQLQK
ANRECQIQIITYGDSVNTIFEFDSEPNELKDSLKEIKFSKDNEEAKLGEAMRMCFNNIES
NWSSDLMSKIIIISSGQSTDDSSDDLVDILSLDNNSIYGLAGCNLANKSSDEAVKDLQSL
LPDQKVIPLGK---

---THKDIFKDVQYLRLLTKAVQLCKVKNEKDIMNKVKGISNLSINDNNNSFNQTPIKNQ
PFFESSSTSSPSPAFFRSPIQQQQQQTSTTSTQSPSPSSSSASTPPPPSQMLNEQPSKTI
NVTIDVVTDSSGTVLTSFEIESSTNESVSELKCKLINEIDPEMNANDWSITKESGTVLFE
SARLSSIIKSFDNSDSIKLVLKKKQKLF*kltkliig*knkkk*kn*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA131 (AHA131Q) /CSM/AH/AHA1-B/AHA131Q.Seq.d/                       1522   0.0
AHA357 (AHA357Q) /CSM/AH/AHA3-C/AHA357Q.Seq.d/                       1142   0.0
SSK247 (SSK247Q) /CSM/SS/SSK2-B/SSK247Q.Seq.d/                       1130   0.0
CHI279 (CHI279Q) /CSM/CH/CHI2-D/CHI279Q.Seq.d/                       1092   0.0
SHE684 (SHE684Q) /CSM/SH/SHE6-D/SHE684Q.Seq.d/                       1090   0.0
AHM223 (AHM223Q) /CSM/AH/AHM2-A/AHM223Q.Seq.d/                       1076   0.0
AHI541 (AHI541Q) /CSM/AH/AHI5-B/AHI541Q.Seq.d/                       1074   0.0
AHH355 (AHH355Q) /CSM/AH/AHH3-C/AHH355Q.Seq.d/                       1037   0.0
AHE569 (AHE569Q) /CSM/AH/AHE5-C/AHE569Q.Seq.d/                       1005   0.0
CHE682 (CHE682Q) /CSM/CH/CHE6-D/CHE682Q.Seq.d/                        981   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   101   3e-32  16
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    56   4e-19  19
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   4e-14  17
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    52   4e-13  15
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    44   7e-12  20
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   2e-11  19
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   1e-10  14
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           38   3e-10  21
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    42   4e-10  15
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    40   1e-09  16
dna update 2004. 2.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_17(AC116305|pid:none) Dictyostelium discoideum chromoso...   150   7e-35
AE017245_363(AE017245|pid:none) Mycoplasma synoviae 53, complete...    35   4.1
FJ445161_1(FJ445161|pid:none) Human rhinovirus 83 strain ATCC VR...    35   5.3
CP000939_1534(CP000939|pid:none) Clostridium botulinum B1 str. O...    35   5.3
CP000962_1611(CP000962|pid:none) Clostridium botulinum A3 str. L...    35   5.3
CP000777_231(CP000777|pid:none) Leptospira biflexa serovar Patoc...    35   7.0
FJ445155_1(FJ445155|pid:none) Human rhinovirus 79 strain ATCC VR...    35   7.0
CP000728_1501(CP000728|pid:none) Clostridium botulinum F str. La...    35   7.0
AB049544_1(AB049544|pid:none) Porcine enterovirus 10 gene for RN...    34   9.1
(Q8T9W1) RecName: Full=Serine protease/ABC transporter tagD;    ...    34   9.1
protein update 2009. 4.26
PSORT 

 psg: 0.31  gvh: 0.39  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for AHA131 is nuc
5' end seq. ID AHA131F
5' end seq. 
>AHA131F.Seq
ATAAAATAAAAATGTTTACAGAAAATCAAAATAATAATCAAAGACATGCACTTAAAACTG
AAATTAAAACAGTTTTTAATTCAGATAGTGGTGTTACTTATTTTTCAATTTTAATTGAAA
CATCATCAAAAATGTCATTGTATAATGTAATTATTAAGACATTTATTACTCAACTTCAAA
AAGCTAATAGAGAGTGTCAAATTCAAATCATTACCTATGGTGATAGTGTTAATACAATCT
TTGAATTTGATTCGGAACCAAATGAATTAAAAGATAGCTTAAAAGAAATTAAATTCTCTA
AAGATAATGAAGAAGCAAAATTGGGTGAAGCAATGAGAATGTGTTTCAATAATATCGAAT
CCAATTGGTCCAGTGATTTAATGTCAAAGATCATCATCATCAGTTCGGGTCAATCTACTG
ATGATTCAAGTGATGATTTAGTTGATATCTTGAGTTTGGATAATAATAGTATCTATGGTT
TGGCAGGCTGCAACCTAGCAAACAAATCATCCGATGAGGCTGTAAAAGATTTGCAATCAC
TTTTACCAGACCAAAAAGTTATCCCATTGGGTAAGANNNNNNNNNN
Length of 5' end seq. 586
3' end seq. ID AHA131Z
3' end seq. 
>AHA131Z.Seq
NNNNNNNNNNAAACTCATAAAGATATCTTTAAAGATGTTCAATATCTTAGATTATTAACC
AAAGCAGTTCAATTGTGTAAAGTTAAAAATGAAAAAGATATAATGAACAAAGTTAAAGGT
ATTTCAAATTTATCAATTAATGATAATAATAATAGTTTTAATCAAACTCCAATTAAAAAT
CAACCTTTTTTTGAATCATCATCAACTTCTTCACCTTCACCAGCTTTCTTTAGATCACCA
ATTCAACAACAACAACAACAAACCTCTACCACTTCAACTCAATCACCATCACCATCATCT
TCATCAGCATCAACACCACCACCACCATCACAAATGCTTAATGAACAACCAAGTAAAACT
ATCAATGTAACTATTGATGTAGTTACTGATTCAAGTGGTACCGTTTTAACTTCATTCGAA
ATTGAATCTTCAACAAATGAATCTGTCTCTGAATTAAAATGTAAACTTATTAATGAAATT
GATCCTGAAATGAATGCTAATGATTGGAGTATTACAAAAGAATCTGGTACAGTTTTATTC
GAATCTGCAAGATTATCATCCATTATTAAATCTTTTGATAATTCAGATTCCATTAAATTG
GTTTTAAAGAAAAAACAAAAATTATTTTAAAAATTAACAAAACTAATAATAGGGTAAAAA
AATAAAAAAAAATAAAAAAATTAAA
Length of 3' end seq. 685
Connected seq. ID AHA131P
Connected seq. 
>AHA131P.Seq
ATAAAATAAAAATGTTTACAGAAAATCAAAATAATAATCAAAGACATGCACTTAAAACTG
AAATTAAAACAGTTTTTAATTCAGATAGTGGTGTTACTTATTTTTCAATTTTAATTGAAA
CATCATCAAAAATGTCATTGTATAATGTAATTATTAAGACATTTATTACTCAACTTCAAA
AAGCTAATAGAGAGTGTCAAATTCAAATCATTACCTATGGTGATAGTGTTAATACAATCT
TTGAATTTGATTCGGAACCAAATGAATTAAAAGATAGCTTAAAAGAAATTAAATTCTCTA
AAGATAATGAAGAAGCAAAATTGGGTGAAGCAATGAGAATGTGTTTCAATAATATCGAAT
CCAATTGGTCCAGTGATTTAATGTCAAAGATCATCATCATCAGTTCGGGTCAATCTACTG
ATGATTCAAGTGATGATTTAGTTGATATCTTGAGTTTGGATAATAATAGTATCTATGGTT
TGGCAGGCTGCAACCTAGCAAACAAATCATCCGATGAGGCTGTAAAAGATTTGCAATCAC
TTTTACCAGACCAAAAAGTTATCCCATTGGGTAAGA----------AAACTCATAAAGAT
ATCTTTAAAGATGTTCAATATCTTAGATTATTAACCAAAGCAGTTCAATTGTGTAAAGTT
AAAAATGAAAAAGATATAATGAACAAAGTTAAAGGTATTTCAAATTTATCAATTAATGAT
AATAATAATAGTTTTAATCAAACTCCAATTAAAAATCAACCTTTTTTTGAATCATCATCA
ACTTCTTCACCTTCACCAGCTTTCTTTAGATCACCAATTCAACAACAACAACAACAAACC
TCTACCACTTCAACTCAATCACCATCACCATCATCTTCATCAGCATCAACACCACCACCA
CCATCACAAATGCTTAATGAACAACCAAGTAAAACTATCAATGTAACTATTGATGTAGTT
ACTGATTCAAGTGGTACCGTTTTAACTTCATTCGAAATTGAATCTTCAACAAATGAATCT
GTCTCTGAATTAAAATGTAAACTTATTAATGAAATTGATCCTGAAATGAATGCTAATGAT
TGGAGTATTACAAAAGAATCTGGTACAGTTTTATTCGAATCTGCAAGATTATCATCCATT
ATTAAATCTTTTGATAATTCAGATTCCATTAAATTGGTTTTAAAGAAAAAACAAAAATTA
TTTTAAAAATTAACAAAACTAATAATAGGGTAAAAAAATAAAAAAAAATAAAAAAATTAA
A
Length of connected seq. 1251
Full length Seq ID -
Full length Seq. -
Length of full length seq. -